Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4483 ATGTATAGTTCGTTCTATTTCAAGTTTGGAATTACTGTAATCGTTCTGGAGTTCATTCTTTTAGGCGATGCTGAGTTCTTAGAAGATGAAAGCACCAAGATTTTTGCTCGGAAAGTGGCTGAACATTACAGTGCTAGGACGAATCAGACTTTGGAAGAGCGAGAAGCTAGTGTTATCATCCATTTAAAGAAGCTTAACAATTGGATTAAAAGTGTCTTGGTTCAGCTTTATGCTCACCGAGGAGATGCTGTTCTCGATCTTGCCTGTGGCAAGGGTGGTGATCTTATCAAATGGGATAAGGCCAAAATTGGATATTATGTTGGCATTGATATAGCTGAAGGATCAATAGAAGATTGTCGTACTCGTTACAATGGTGATGCTGACCATCATCAACGTCGTAAAAAGTTTTCATTTCCAGCCCGTCTCATATGTGGAGATTGTTATGAGGCAAGGCTGGATCATGTCCTAGCAGATGATGCTCCATTCGACATTTGCAGTTGCCAGTTTGCGTTGCATTATTCTTGGTCTACTGAGGCCCGTGCACGACGTGCCTTGGCCAATATATCAGCTCTTCTCCGCCCAGGAGGTATTCTCATTGGAACCATGCCAGATGCTAATGTGATCATCAAAAAGCTTAGAGAAGCTGAAGGGTTGATGTTTGGAAATAGCGTCTATTGGATACGCTTTGATGAAGAATATGCCGAAAAGAAATTTAACGCTTCCAGCCCCTTTGGAATAAAGTACTTGTTTCATCTAGAGGATGCTGTTGATTGCCCTGAATGGATTGTCCCATTTCATGTTTTCAAATCGTTGGCTGAAGAGTACGACTTAGAGTTGGTTTTTGTCAAGAACTCACATGAATTCGTGCATGAGTACTTGAAAAAACCAGAATTTGTGGATCTAATGCGACGACTTGGCGCCTTGGGTGATGGCAACCAAGATCAAAGTACATTATCTCCCGACGAGTGGGAAGTGGCATATCTGTACCTTTCATTTGTTTTGAGAAAGCGAGGCCAACCCGACCGGACGCAGGCACCGAATAGAAGAGACAGGGGGCAAATGCAAATAGCAAAGGGGGACATAATGTACATTTCAACTGATTAA 1104 42.66 MYSSFYFKFGITVIVLEFILLGDAEFLEDESTKIFARKVAEHYSARTNQTLEEREASVIIHLKKLNNWIKSVLVQLYAHRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEARLDHVLADDAPFDICSCQFALHYSWSTEARARRALANISALLRPGGILIGTMPDANVIIKKLREAEGLMFGNSVYWIRFDEEYAEKKFNASSPFGIKYLFHLEDAVDCPEWIVPFHVFKSLAEEYDLELVFVKNSHEFVHEYLKKPEFVDLMRRLGALGDGNQDQSTLSPDEWEVAYLYLSFVLRKRGQPDRTQAPNRRDRGQMQIAKGDIMYISTD 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 110460987 110466343 - Tan0006814.3 Tan01g4483 741907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4483 367 Pfam mRNA (guanine-N(7))-methyltransferase domain 28 337 IPR004971 -
Tan01g4483 367 Gene3D Vaccinia Virus protein VP39 55 338 IPR029063 -
Tan01g4483 367 ProSiteProfiles mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. 57 337 IPR004971 -
Tan01g4483 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 336 IPR029063 -
Tan01g4483 367 FunFam mRNA cap guanine-N7 methyltransferase 54 338 - -
Tan01g4483 367 CDD AdoMet_MTases 84 199 - -
Tan01g4483 367 PIRSF ABD1 23 339 IPR016899 GO:0004482(InterPro)|GO:0006370(InterPro)
Tan01g4483 367 PANTHER MRNA GUANINE-7- METHYLTRANSFERASE 34 340 IPR039753 GO:0004482(PANTHER)|GO:0004482(InterPro)|GO:0005634(PANTHER)|GO:0005845(PANTHER)|GO:0006370(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4483 K00565 - - csv:101217782 689.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4481 Tan-Chr1:110460987 Tan01g4483 Tan-Chr1:110460987 6.90E-206 dispersed
Tan01g4482 Tan-Chr1:110460987 Tan01g4483 Tan-Chr1:110460987 7.70E-149 tandem
Tan01g4483 Tan-Chr1:110460987 Tan01g4484 Tan-Chr1:110460987 5.10E-217 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g391 . . . . . . . . . . Cma01g01165 . . . . . Cpe02g00737 Bhi09g01965 Tan01g4483 . . Hepe01g1328 . . . . . . . . . . Cone9ag0116 . . Lsi04g01258 . Chy04g01032 . . . . . Bpe11g00516 . . Bma14g00368 . Cmo01g01220 . . . . Car16g00578 . . . . . . . . . Cla05g01557 Cam05g1664 Cec05g1669 Cco05g1709 Clacu05g1659 Cmu05g1552 Cre05g1664 . . . Cme04g00774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004967 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40