Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4506 ATGGTATCCCCTGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTTTCGGATGCCAATTTCCCAGTCACGAGTTCAAGCTTCTCGTGGGCTATTCAACCCTTTAACGGCACCCCTGATGTTGGTGTGGAAATTGATGGATCATCAGCAGATCTGGATGGTCGTCTAGAATCTGGTTCCAAGAAGAGGGTCAGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGAGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTAGATCCTGGAAGGCCACCCAAAACTGACAAGGCTGCAATTTTACTTGATGCCGTTCGCATGGTGAATCAGTTGCGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGATAAGATTAAAGAGTTGAAGGCCGAGAAGAATGAGCTTCGCGACGAGAAGCAGAGGCTCAAGACAGACAGGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCACGCTCACCCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGAGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCCTTGGTTACCATCCAGGAGTTGCCATGTGGCAGTTCATGCCCCCTGCTGCAGTGGACACGTCACAGGACCACGTTCTCCGGCCACCCGTCGCTTAA 705 48.94 MVSPENPNWLFDYGLIDDIPVSDANFPVTSSSFSWAIQPFNGTPDVGVEIDGSSADLDGRLESGSKKRVRSDSCSGSSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILLDAVRMVNQLRSEAQKLKESNSSLQDKIKELKAEKNELRDEKQRLKTDREKLEQQVKSMHAHPGFLPPPIPTFAAQSQAPGNKLVPFLGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 110703556 110706669 + Tan0004337.1 Tan01g4506 741930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4506 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Tan01g4506 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Tan01g4506 234 MobiDBLite consensus disorder prediction 52 81 - -
Tan01g4506 234 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Tan01g4506 234 CDD bHLH_AtILR3_like 80 155 - -
Tan01g4506 234 FunFam Transcription factor bHLH34 66 124 - -
Tan01g4506 234 PANTHER BHLH TRANSCRIPTION FACTOR 8 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Tan01g4506 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
Tan01g4506 234 Coils Coil 116 178 - -
Tan01g4506 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983(InterPro)
Tan01g4506 234 Gene3D - 66 124 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1673 Tan-Chr1:17783346 Tan01g4506 Tan-Chr1:110703556 9.10E-87 dispersed
Tan01g4506 Tan-Chr1:110703556 Tan05g3165 Tan-Chr5:83609454 5.80E-49 dispersed
Tan10g0694 Tan-Chr10:5709531 Tan01g4506 Tan-Chr1:110703556 8.90E-31 transposed
Tan01g4506 Tan-Chr1:110703556 Tan05g0850 Tan-Chr5:6645600 8.90E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26567 PF00010 HLH 1.10E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4506 - - - 0.0