Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4563 ATGCAGAGTGACGTTTTTCTGATATGCTCAAATGCAATGCAATACAATTCACCAGAAACCATTTACCACAAACAGGCACGTTCCATTCAAGAGCTAGCCAAGAAGAAATTTGAGAGGGTAAGAATTGAAGTTGAACGCTCTGAGAAAGAGTTGAAGTTGGAGCAGAGTACAAAATCCAATTCTTACATCAAGAAACAGCCACCAAAGAAACCCTTTTTCAGGACTTTGCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACACTTGCTGCCACGGGAGATGTACAGAATAGTTCCAATCCAATCCAAGGTGCTAACTGTGAGGTACCTAACAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCCTCCTTGATACTACTAATCAGGAAAAGGCTGAAGAGCTCTTCTCAGGAAGGGGTCTTCTAGGTAAATTAGGGAGAAAGACATCTGTGTTTGATGACAACCGCCGTGCAACTTACAACAATTCTAATTCACCAGTGCCAAAATCAGAGTCAATATTTTCAACCTTTGAGGATGAGATAAGACAGCTTGTTGCGGTTGGGCTTCATGCGGAGTATTCCTATGCTAGGAGTCTGGCTCGATTTGCTGCGACACTTGGGCCTATTGCTTGGAAAGTTGCATCCCAGAGGATTGAGCAGGCCGTACCTGTTGGATGTAAATTCGGCCGTGGTTGGGTTGGAGAATATGAACCACTTCCAACACCAGTATTAATGTTTGAGAACAACAACCAGAAGGAACCTGGTTTCAATAGTAACTTGCATGCTACCAGTGAATTAAGAAAGGATGGAAAGCCTTCAGACACTCCTTTGCCAAAGAAGGAACATTCTCTAAGTGCACCAAGTACAGAAGTGAATGGTCTTGCTAGAGGATCCACCTTAGATGGGAAACCGTCTTTCTTTAGGTCCACCACCCCAAGTCCCGGTCTATCTCCACGGCAAAACCTACAGACCAAAAATTTTAGAGAGGGAGAGAAGGTTAAAAAGCAAGTTGAGTTAAATTCCTTGCCTTCACCAAAACAAAATAAAGTGGATCTTGGTGTAGAGAAGCAACTTGCTGCCAATCCAAATATGACTGCTTCTAGGTCTAGAGATATGACGTCAGTAAACTTAAATCTTGTGCAATCTGCGCCTTATAAACTGCCCGGTGTTAATGGCGTTGTAACTGGAGGATTGCCTAATGGAAAATTCCTAAGCAATTGTTTGAATAGTCCACGGGCTGCTTTATCATCTTCTAGCTTGCCTTCTCAAACAGCCCCAGTGGCAACTTCTCATGGACAAGACCTACATCCGAGTAAGCCGGTACAATTGATGAGAATGATGTCTGAAAGAACCCCAAAACAAGAGAACTCATCCAATCAATCTTCATCTGATTCTCCGCCAGCTTTGTCATCAGTCCCTTCTGCAATGAGAGACGATTCTAATAATGCTGCTGCAGTAGCTTCTCGTGCATGGATGTCCATTGGGGCTGGAGGGTTTAAACAAGTCAGAGACAATTCCACACCTAAAAGTCAAATCTCTGCTGATTCACTGTATAATCCAGCTCGGGAGTTTCATCCGCAAATGACACGAGCATGGGGTGAGTTTCGTGTTGGAGGCAATCAGCTTCAATCTGAGAAGAGCAATTTCCCTATGCAGGCATTTGTTCCACAAGCCACTCTGGTACCAAATGAACAACAGCTGCAAAACCGGTCCGTGATTTACCCTCAGCTAGTTCAGGCTGACATGTCTAAGTTCCAGTTGCAATCGACTTGGCGAGCTCTCGGTCCACATAACCAGCCAAGGAAGAAACAGGAAATGCTTCCTCCTGACTTGAATATCGGTTTTCAGTCTCCTGGGTCTCCAGTAAAACAATCCTCTACTGTTCTGGTTGACTCCCAGCAGCCAGACCTGGCTTTGCAACTTTAA 1929 44.43 MQSDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRIEVERSEKELKLEQSTKSNSYIKKQPPKKPFFRTLQEPIGSDFSSGATLAATGDVQNSSNPIQGANCEVPNNIDGQVEGSSSLLDTTNQEKAEELFSGRGLLGKLGRKTSVFDDNRRATYNNSNSPVPKSESIFSTFEDEIRQLVAVGLHAEYSYARSLARFAATLGPIAWKVASQRIEQAVPVGCKFGRGWVGEYEPLPTPVLMFENNNQKEPGFNSNLHATSELRKDGKPSDTPLPKKEHSLSAPSTEVNGLARGSTLDGKPSFFRSTTPSPGLSPRQNLQTKNFREGEKVKKQVELNSLPSPKQNKVDLGVEKQLAANPNMTASRSRDMTSVNLNLVQSAPYKLPGVNGVVTGGLPNGKFLSNCLNSPRAALSSSSLPSQTAPVATSHGQDLHPSKPVQLMRMMSERTPKQENSSNQSSSDSPPALSSVPSAMRDDSNNAAAVASRAWMSIGAGGFKQVRDNSTPKSQISADSLYNPAREFHPQMTRAWGEFRVGGNQLQSEKSNFPMQAFVPQATLVPNEQQLQNRSVIYPQLVQADMSKFQLQSTWRALGPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSTVLVDSQQPDLALQL 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 111503038 111506925 - Tan0022695.2 Tan01g4563 741987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4563 642 MobiDBLite consensus disorder prediction 414 438 - -
Tan01g4563 642 SUPERFAMILY Bromodomain 2 39 IPR036427 GO:0005515(InterPro)
Tan01g4563 642 MobiDBLite consensus disorder prediction 451 479 - -
Tan01g4563 642 PANTHER BROMODOMAIN CONTAINING PROTEIN 2 641 IPR051831 -
Tan01g4563 642 MobiDBLite consensus disorder prediction 250 326 - -
Tan01g4563 642 MobiDBLite consensus disorder prediction 451 484 - -
Tan01g4563 642 MobiDBLite consensus disorder prediction 265 279 - -
Tan01g4563 642 MobiDBLite consensus disorder prediction 304 325 - -
Tan01g4563 642 Coils Coil 30 57 - -
Tan01g4563 642 Gene3D - 1 70 IPR036427 GO:0005515(InterPro)
Tan01g4563 642 MobiDBLite consensus disorder prediction 414 432 - -
Tan01g4563 642 CDD Bromodomain 2 37 - -
Tan01g4563 642 MobiDBLite consensus disorder prediction 250 264 - -
Tan01g4563 642 MobiDBLite consensus disorder prediction 618 642 - -
Tan01g4563 642 MobiDBLite consensus disorder prediction 595 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4563 K22184 - - csv:101204699 1101.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4563 Tan-Chr1:111503038 Tan02g0574 Tan-Chr2:5086697 2.40E-36 dispersed
Tan01g4562 Tan-Chr1:111503038 Tan01g4563 Tan-Chr1:111503038 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39