Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4575 ATGGAAGCACTGCCGTTCCCCATCGCGGTTTCTTCTTCTTCTTCTTCTTCCCCCTCTTCTCAGACTGTAATTCGATCACTTTCATCGTCGTCTCATACGAGCTCGCTCGTTTTTCTTCGCAATAATTATTACAAAACTCGTCATCTCAAAGTCAAGTCCTCCGGTAAGTTTGCAGTTCGTGCCTCACTTTCTGGTGATTCAGTCGTGACTTTGCTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGAAATGCAATTCGTTTCCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCAGCCATGGATGTGCTAAACAGTAAAGGCATGGCTGAAGCACTCTGCACTTATATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTTCAACTACTCTTTGAATCAAGCGACGAGAATGGACCAGTAAAAGGTCTTGGCATAATACCGGGTGTGGTTGGGCGTTTCGACTCTTCCAATGGTTTTAGTGTACCCCATATTGGGTGGAATGCTTTGGAAATCTCAGAAGACTCTGAGATCTTGGATGATATTTCTAATCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCAGACAAGAACAAGGAGTGGATCTCTTCTACTTGCAGCTATGGCGACAGGTTTATAGCCTCAGTTAGAAGGGGAAATGTCCATGCAGTTCAATTCCACCCAGAAAAGAGTGGAGATGTAGGCCTGTCTGTCCTAAGAAGATTCTTGTTTCCAAAGTCAACTTTGACCAAGAAGCCTGCTGAGGGGAAGGCATCGAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGACAAATGACCAAGGGGATCTTGTTGTTACCAAAGGGGACCAATATGACGTAAGGGAGCAAACAGAAGAGAATGAGGTGAGGAACCTTGGCAAGCCGGTTGAGCTTGCTGGACAATACTACAAGGATGGAGCTGACGAGGTCAGTTTTTTAAATATAACTGGTTTCCGTGACTTCCCCCTCGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGAGGCGGAATTAGAGATTTTAAGGATGCAAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTCAGATCTGGAGCTGATAAAATATCTATCGGAAGTGATGCAGTTTATGCTGCTGAGGAATATTTAAGAACTGGCGTAAAGACTGGAAAGAGCAGCTTGGAACAGATTTCTACGGTTTATGGAAATCAGGCTGTTGTGGTAAGTATTGATCCTCGCAGAGTGTACCTTAAAAGTCCTGATGATGTGGAGTTCAAAGTTGTCCGAGTTACAAACCCAGGTCCAAATGGAGAAGAATATGCATGGTATCAATGTACAGTTAATGGAGGTCGAGAAGGTCGACCCATTGGAGCTTATGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATACTGCTAAACTGCATTGATTGTGATGGTCAAGGAAAAGGATTTGATTTAGATCTAATAAAGCTGATATCGGATTCCGTGAGCATCCCTGTTATTGCCAGCAGTGGTGCTGGGTGTTCTGACCATTTCTCTGAGGTGTTTAACAAAACGAATGCATCTGCTGCCCTTGCTGCCGGCATTTTCCATCGCAAGGAGGTGCCTATTCAGTCCGTAAAAGAGCATTTATTGAAGGAAGGCATAGAAGTCAGAATCTAA 1794 44.15 MEALPFPIAVSSSSSSSPSSQTVIRSLSSSSHTSSLVFLRNNYYKTRHLKVKSSGKFAVRASLSGDSVVTLLDYGAGNVRSVRNAIRFLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSDENGPVKGLGIIPGVVGRFDSSNGFSVPHIGWNALEISEDSEILDDISNRHVYFVHSYRAMPSDKNKEWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKSTLTKKPAEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISTVYGNQAVVVSIDPRRVYLKSPDDVEFKVVRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDLDLIKLISDSVSIPVIASSGAGCSDHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 111579935 111591996 - Tan0008273.1 Tan01g4575 741999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4575 597 Gene3D Aldolase class I 289 597 IPR013785 -
Tan01g4575 597 PIRSF IGPS_HisHF 66 597 IPR014640 GO:0000105(InterPro)|GO:0000107(InterPro)|GO:0016763(InterPro)|GO:0016833(InterPro)
Tan01g4575 597 CDD GATase1_IGP_Synthase 69 267 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Tan01g4575 597 FunFam Imidazole glycerol phosphate synthase hisHF 64 289 - -
Tan01g4575 597 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 68 269 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Tan01g4575 597 Pfam Histidine biosynthesis protein 288 579 IPR006062 GO:0000105(InterPro)
Tan01g4575 597 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 285 597 IPR050064 GO:0000107(PANTHER)
Tan01g4575 597 CDD HisF 287 591 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Tan01g4575 597 SUPERFAMILY Class I glutamine amidotransferase-like 68 268 IPR029062 -
Tan01g4575 597 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 68 276 - -
Tan01g4575 597 NCBIfam imidazole glycerol phosphate synthase subunit HisH 69 267 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Tan01g4575 597 Pfam Glutamine amidotransferase class-I 71 266 IPR017926 -
Tan01g4575 597 FunFam Imidazole glycerol phosphate synthase hisHF 287 597 - -
Tan01g4575 597 SUPERFAMILY Ribulose-phoshate binding barrel 284 596 IPR011060 -
Tan01g4575 597 Gene3D - 65 288 IPR029062 -
Tan01g4575 597 NCBIfam imidazole glycerol phosphate synthase subunit HisF 285 596 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4575 K01663 - - csv:101205184 1090.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g538 Blo03g00552 . Bda07g00369 . . . . . . . . Cma09g00961 Car01g00993 Car09g00876 Sed04g3225 Cpe06g00777 Cpe02g00781 Bhi09g01662 Tan01g4575 Cmetu01g2068 . . Mch11g1201 . . . . . . . . . . . . Lsi02g01893 Csa07g01105 . . . . . . Bpe11g00554 . . Bma14g00332 . Cmo01g01168 Cmo09g00961 . . . . . . . . . . . . . Cla09g01020 Cam09g1076 Cec09g1076 Cco09g1096 . . Cre09g1042 . . . Cme01g01017
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002500 2 3 2 2 2 1 4 2 1 3 1 1 2 2 1 4 1 4 3 2 2 2 2 2 1 1 2 2 1 1 59