Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4600 ATGGAGGATCGGGAGGAGGAAGAGAAGGCAGAAGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTCATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCCTCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAGAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATAGGCCGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGCGATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTGATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGAAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTATTTGATCATGGAATATCTGCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGATACATTGACTGAAAATGTGGCTAAATTTTACATTGCTCAAAGTGTTCTTGCAATAGAATCTATCCACGGGCACAACTATATTCACAGGGATATCAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTTTCCGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAACCATGGATGATGAAAATTTGGCAGAACCAATGGATATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGTGAACAGCTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACCGTTGGAACACCAGATTATATAGCTCCAGAAGTGTTACTTAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCACTGGAAAAATCACTTGAAGTTTCCGGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGACGTTGAGCATAGACTTGGCACTGGAGGAGCATACCAAATTAAAGCTCATCCTTGGTTCAAAGATGTCGTCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGACCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACGTACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCGATGAAACAGCCTCCAATTGACGTATTAAATGGCACTGGGGGAGACTATGCAGCCGAACTAATAGCCAATGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCAATGTTGCCATAA 1551 42.62 MEDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHGHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKTMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSLDSQRLSMKQPPIDVLNGTGGDYAAELIANEAEMQMLAVSGDPMLP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112003969 112010811 - Tan0007401.3 Tan01g4600 742024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4600 516 Gene3D Phosphorylase Kinase; domain 1 56 176 - -
Tan01g4600 516 SMART pkinase_C_6 395 460 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4600 516 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4600 516 SMART serkin_6 93 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4600 516 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4600 516 FunFam Non-specific serine/threonine protein kinase 293 412 - -
Tan01g4600 516 CDD MobB_NDR_LATS-like 27 88 - -
Tan01g4600 516 SUPERFAMILY Protein kinase-like (PK-like) 90 440 IPR011009 -
Tan01g4600 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 462 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Tan01g4600 516 FunFam Non-specific serine/threonine protein kinase 413 423 - -
Tan01g4600 516 MobiDBLite consensus disorder prediction 1 20 - -
Tan01g4600 516 FunFam Non-specific serine/threonine protein kinase 177 244 - -
Tan01g4600 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g4600 516 Gene3D Transferase(Phosphotransferase) domain 1 293 414 - -
Tan01g4600 516 Gene3D Transferase(Phosphotransferase) domain 1 177 243 - -
Tan01g4600 516 FunFam Non-specific serine/threonine protein kinase 54 176 - -
Tan01g4600 516 Pfam Protein kinase domain 285 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4600 516 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g4600 516 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524(InterPro)
Tan01g4600 516 CDD STKc_NDR_like 91 459 - -
Tan01g4600 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4598 Tan-Chr1:112003969 Tan01g4600 Tan-Chr1:112003969 5.00E-303 dispersed
Tan01g4600 Tan-Chr1:112003969 Tan09g1116 Tan-Chr9:63472031 9.90E-227 dispersed
Tan01g4599 Tan-Chr1:112003969 Tan01g4600 Tan-Chr1:112003969 5.00E-303 tandem
Tan01g4600 Tan-Chr1:112003969 Tan01g4601 Tan-Chr1:112003969 5.00E-303 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67145 PF00069 Pkinase 1.00E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4600 K08790 - csv:101212228 1014.22