Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4612 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGATAAGGAAGACAATGAGAAGTTGAGGAGTAAGACTAAGAAGTGGAGGCTGTGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGCACATAGAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCTGATTCTTTTACCGCCGCTGTCGCCACCGTCCTCCGTGCTCCGCCCAAAGATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGAATCCAAACTGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCTCGTCGTGTGAGGATGTCGGTCGAGGGACAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAAACTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACAACGCCAAACTCAACTTCGCGAACAAATGCTTCAATTTATGCTCTTAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACCGATTCGATTGAAGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTGTGTCTAAACATACCAAAGGTTCTGAACCAAGTTTGGTGAAAGTCAGGAAGAACAATGTATCAACCAGGATATCTGCTAAACCACCCTCAAGTGGACAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCTGTTTCGGGGCATGCTTTCTCAACCATAGAAAGAACAGAGAACAGCAGTTACAGTAGGCCAAGTTACATGAACCTCACGGAGTCGACAAAGGCAAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGCGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACGAAGCTAAGGTCATGA 1338 47.68 MGGSGKWMKVFIGQRKSDKEDNEKLRSKTKKWRLWRSPSGDLSSAWKGYKGAHRAASEGSDSPRAADSFTAAVATVLRAPPKDFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKTKLQMRQDGAFKRERAIAYSLVQKQLKATTPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSIEVTPPSKSCTESVVSKHTKGSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENSSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNADSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112130964 112132902 + Tan0015403.1 Tan01g4612 742036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4612 445 MobiDBLite consensus disorder prediction 307 326 - -
Tan01g4612 445 FunFam IQ-domain 11 88 139 - -
Tan01g4612 445 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Tan01g4612 445 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Tan01g4612 445 ProSiteProfiles IQ motif profile. 113 140 - -
Tan01g4612 445 MobiDBLite consensus disorder prediction 271 298 - -
Tan01g4612 445 ProSiteProfiles IQ motif profile. 89 117 - -
Tan01g4612 445 MobiDBLite consensus disorder prediction 411 445 - -
Tan01g4612 445 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
Tan01g4612 445 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
Tan01g4612 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4612 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4612 Tan-Chr1:112130964 Tan11g0812 Tan-Chr11:6799965 2.50E-29 dispersed
Tan09g0678 Tan-Chr9:55436653 Tan01g4612 Tan-Chr1:112130964 3.40E-42 transposed
Tan01g4612 Tan-Chr1:112130964 Tan06g0160 Tan-Chr6:1469408 1.40E-59 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39