Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4612 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGATAAGGAAGACAATGAGAAGTTGAGGAGTAAGACTAAGAAGTGGAGGCTGTGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGCACATAGAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCTGATTCTTTTACCGCCGCTGTCGCCACCGTCCTCCGTGCTCCGCCCAAAGATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGAATCCAAACTGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCTCGTCGTGTGAGGATGTCGGTCGAGGGACAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAAACTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACAACGCCAAACTCAACTTCGCGAACAAATGCTTCAATTTATGCTCTTAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACCGATTCGATTGAAGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTGTGTCTAAACATACCAAAGGTTCTGAACCAAGTTTGGTGAAAGTCAGGAAGAACAATGTATCAACCAGGATATCTGCTAAACCACCCTCAAGTGGACAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCTGTTTCGGGGCATGCTTTCTCAACCATAGAAAGAACAGAGAACAGCAGTTACAGTAGGCCAAGTTACATGAACCTCACGGAGTCGACAAAGGCAAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGCGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACGAAGCTAAGGTCATGA 1338 47.68 MGGSGKWMKVFIGQRKSDKEDNEKLRSKTKKWRLWRSPSGDLSSAWKGYKGAHRAASEGSDSPRAADSFTAAVATVLRAPPKDFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKTKLQMRQDGAFKRERAIAYSLVQKQLKATTPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSIEVTPPSKSCTESVVSKHTKGSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENSSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNADSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112130964 112132902 + Tan0015403.1 Tan01g4612 742036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4612 445 MobiDBLite consensus disorder prediction 307 326 - -
Tan01g4612 445 FunFam IQ-domain 11 88 139 - -
Tan01g4612 445 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Tan01g4612 445 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Tan01g4612 445 ProSiteProfiles IQ motif profile. 113 140 - -
Tan01g4612 445 MobiDBLite consensus disorder prediction 271 298 - -
Tan01g4612 445 ProSiteProfiles IQ motif profile. 89 117 - -
Tan01g4612 445 MobiDBLite consensus disorder prediction 411 445 - -
Tan01g4612 445 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
Tan01g4612 445 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
Tan01g4612 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4612 Tan-Chr1:112130964 Tan11g0812 Tan-Chr11:6799965 2.50E-29 dispersed
Tan09g0678 Tan-Chr9:55436653 Tan01g4612 Tan-Chr1:112130964 3.40E-42 transposed
Tan01g4612 Tan-Chr1:112130964 Tan06g0160 Tan-Chr6:1469408 1.40E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4612 - - - 0.0