Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4617 ATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCTGTGTTGACTTGTGCATCTGGTGAAGTAACAAGAAATGAAACCACTGACCCTCTGTATTCTCATCACTCCTCTGCTTCAACAAATCAGCCGCCGCCACCGCCATCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGATGCTGAAGTGATAGCTTTGTCGCCAAAAGCGCTTCTAACGACGAATAGATTCATTTGCGAGATCTGCAACAAGGGATTTCAAAGAGATCAGAATCTTCAACTCCACAGAAGAGGACACAATCTGCCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAACCGACATGCGTGCACCATCACCCGTCGAGGGCTCTCGGCGATCTAACTGGGATCAAGAAGCACTTCTGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGAAAAGTGCTCAAAGAGATATGCAGTTCAATCAGACTGGAAAGCTCACTCCAAGATTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGTGATGCCTTGGCTCAGGAAAGTACCAATTTTACATCATCAGCCATAAATAACAACAACCCAATTCCAACAACAACAACAATTTTCCCATCACTTCTTCGCCAATTCCCACTTAAAACTGAAAACCAAGATCGTTTTTTTCCTTTAACTTCTTCTCATCAACAACTTCAACTTCCCTCAACCAACAACAATAATATCCTCATTCCCTTTCACAACCCTCAACAAAACCCTAACCCTACTTCCATTGGATACGGGTTACCGACTCCCGTGTTTGGTTCTGCATGGGAATTGAATTCTCCAGCTGAAACTCCTCTCCCTCCTCCACCTCCAATTTTTCATCACATGATGCCTTTTGAAGAGGCATGCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAGAGCTAATAAAGACGGTGGCGGTGGCGCCGGAGAGATAACGAGGGATTTTCTGGGGCTGAGAGCAGTGGCTCGAGTACAGCCGGATCATCGTATGTTCGAGAATGAGATAATAAACGACATGTCGAATTTGGATTCTTCTTCTTCGACATTTGGAATGCACCAGAATCATCAAACCCAGACCACGTACGTTTTGGCGTGA 1212 44.97 MMMKGNLMVDENLSVLTCASGEVTRNETTDPLYSHHSSASTNQPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFTSSAINNNNPIPTTTTIFPSLLRQFPLKTENQDRFFPLTSSHQQLQLPSTNNNNILIPFHNPQQNPNPTSIGYGLPTPVFGSAWELNSPAETPLPPPPPIFHHMMPFEEACFEEALNGILMNNNRANKDGGGGAGEITRDFLGLRAVARVQPDHRMFENEIINDMSNLDSSSSTFGMHQNHQTQTTYVLA 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112164888 112167648 + Tan0003065.2 Tan01g4617 742041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4617 403 SMART c2h2final6 155 175 IPR013087 -
Tan01g4617 403 SMART c2h2final6 79 101 IPR013087 -
Tan01g4617 403 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 154 178 - -
Tan01g4617 403 FunFam protein indeterminate-domain 12-like 58 126 - -
Tan01g4617 403 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 181 221 - -
Tan01g4617 403 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Tan01g4617 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Tan01g4617 403 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 259 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g4617 403 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Tan01g4617 403 MobiDBLite consensus disorder prediction 27 64 - -
Tan01g4617 403 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 116 150 - -
Tan01g4617 403 Gene3D Classic Zinc Finger 60 126 - -
Tan01g4617 403 Gene3D Classic Zinc Finger 148 215 - -
Tan01g4617 403 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Tan01g4617 403 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4617 Tan-Chr1:112164888 Tan01g4624 Tan-Chr1:112190239 7.50E-198 dispersed
Tan01g4616 Tan-Chr1:112164888 Tan01g4617 Tan-Chr1:112164888 1.00E-210 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26572 PF12171 zf-C2H2_jaz 5.60E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4617 K25870 - csv:101215280 520.776