Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4624 ATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCTGTGTTGACTTGTGCATCTGGTGAAGTAACAAGAAATGAAACCACTGACCCTCTGTATTCTCATCACTCCTCTGCTTCAACAAATCAGCCGCCGCCACCGCCATCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGATGCTGAAGTGATAGCTTTGTCGCCAAAAGCGCTTCTAACGACGAATAGATTCATTTGCGAGATCTGCAACAAGGGATTTCAAAGAGATCAGAATCTTCAACTCCACAGAAGAGGACACAATCTGCCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAACCGACATGCGTGCACCATCACCCGTCGAGGGCTCTCGGCGATCTAACTGGGATCAAGAAGCACTTCTGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGAAAAGTGCTCAAAGAGATATGCAGTTCAATCAGACTGGAAAGCTCACTCCAAGATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGTGATGCCTTGGCTCAGGAAAGTACCAATTTTACATCATCAGCCATAAATAACAACAACCCAATTCCAACAACAACAACAATTTTCCCATCACTTCTTCGCCAATTCCCACTTAAAACTGAAAACCAAGATCGTTTTTTTCCTTTAACTTCTTCTCATCAACAACTTCAACTTCCCTCAACCAACAACCATAATATCCTCATTCCCTTTCACAACCCTCAACAAAACCCTAACCCTACTTCCATTGGATACGGGTTACCGACTCCCGTGTTTGGTTCTGCATGGGAATTGAATTCTCCAGCTGAAACTCCTCTCCCTCCTCCACCTCCAATTTTTCATCACATGATGCCTTTTGAAGAGGCATGCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAGAGCTAATAAAGACGGTGGCGGTGGCGCCGGAGAGATAACGAGGGATTTTCTGGGGCTGAGAGCAGTGGCTCGAGTACAGCCGGATCATCGTATGTTCGAGAATGAGATAATAAACGACATGTCGAATTTGGATTCTTCTTCTTCGACATTTGGAATGCACCAGAATCATCAAACCCAGACCACGTACGTTTTGGCGTGA 1212 44.97 MMMKGNLMVDENLSVLTCASGEVTRNETTDPLYSHHSSASTNQPPPPPSKKKRNLPGNPDPDAEVIALSPKALLTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESTNFTSSAINNNNPIPTTTTIFPSLLRQFPLKTENQDRFFPLTSSHQQLQLPSTNNHNILIPFHNPQQNPNPTSIGYGLPTPVFGSAWELNSPAETPLPPPPPIFHHMMPFEEACFEEALNGILMNNNRANKDGGGGAGEITRDFLGLRAVARVQPDHRMFENEIINDMSNLDSSSSTFGMHQNHQTQTTYVLA 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112190239 112192737 + Tan0004294.1 Tan01g4624 742048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4624 403 SMART c2h2final6 155 175 IPR013087 -
Tan01g4624 403 SMART c2h2final6 79 101 IPR013087 -
Tan01g4624 403 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 154 178 - -
Tan01g4624 403 FunFam protein indeterminate-domain 12-like 58 126 - -
Tan01g4624 403 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 181 221 - -
Tan01g4624 403 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Tan01g4624 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Tan01g4624 403 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Tan01g4624 403 MobiDBLite consensus disorder prediction 27 64 - -
Tan01g4624 403 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 116 150 - -
Tan01g4624 403 Gene3D Classic Zinc Finger 60 126 - -
Tan01g4624 403 Gene3D Classic Zinc Finger 148 215 - -
Tan01g4624 403 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Tan01g4624 403 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 264 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g4624 403 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4616 Tan-Chr1:112164888 Tan01g4624 Tan-Chr1:112190239 7.50E-198 dispersed
Tan01g4617 Tan-Chr1:112164888 Tan01g4624 Tan-Chr1:112190239 7.50E-198 dispersed
Tan01g4624 Tan-Chr1:112190239 Tan04g2759 Tan-Chr4:87095696 3.10E-90 dispersed
Tan01g4624 Tan-Chr1:112190239 Tan01g4625 Tan-Chr1:112190554 1.80E-199 tandem
Tan01g4624 Tan-Chr1:112190239 Tan06g0162 Tan-Chr6:1498890 8.90E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26573 PF12171 zf-C2H2_jaz 5.60E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4624 K25870 - csv:101215280 521.931