Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4650 ATGATGATCGGCGAACAATCTAGATTCAATCACACCATTCAGGTCCCCCCATGGGACCCACTCGAAGACCATCACATGACCGGAATTTCCTCCCCGGTCTTCATCGCCGCCGGTGTTGACTCCTTCATCGACTCCTTTTCTGCCATTCACCGTTACCTTCCCTCCGCCCCCGATTCCGACGAATTGGACGCCTCTCACTCTCCGGTGGATGGTTTTTCCTGTGACCATTTCCGGATGTTCGAGTTTAAAATCCGGAGATGCGCACGTGGCCGATCGCACGATTGGACCGAGTGTCCCTACGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCGGAGTTTCGTAAAGGGAATTGCAAGAAAGGGGATTCTTGCGATCTCGCTCACGGGATTTTCGAGTGTTGGCTCCATCCCGCTCGGTACCGGACTCAGCCCTGTAAGGACGGACTGGCCTGTCGCCGCCGTGTCTGCTTTTTCGCCCACTCGCCGGAGCAGCTGCGGATTCTGCCGCAGCAGAGCCCGAGAACGCCAGTTTCGGCCGATTCCTTTGATGGGTCCTCCCGAATTGCACATGCATTCGATTCCTATTTTGCCAAGGGGTCATTCGTGACCTCACCCACTTCAATTCTATCAACCCCGCCGGTCTCTCCGCCGTCCGATTCACCTCCCATGTCGCCGAATTGCCCTCAACTCGGCGGCGGGTCGTTTAATTCGATGAATGGGCTCATCTCGTCCATGCGTAATCTTCAAATTGGGAAATTTAAATCAACCCCTCAATGGGGGGTTCAATTGAGGCAGAACTTGCGTTCTCCCTCTGGCTCTGGTTTCTACAGCTTACCGTCGACTCCGACCACCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCTGCAATGGAAAGAGTGGAATCTGGAAGAAACCTGAGAGCTAAAATGTATGCGAAACTCAGCAAAGACAACTCAGTGGAGCAGCAGATGGATTCGACATTGACACCCGATGTCGGATGGATCTCGGAGCTATTAATGTGA 1068 53.93 MMIGEQSRFNHTIQVPPWDPLEDHHMTGISSPVFIAAGVDSFIDSFSAIHRYLPSAPDSDELDASHSPVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHSPEQLRILPQQSPRTPVSADSFDGSSRIAHAFDSYFAKGSFVTSPTSILSTPPVSPPSDSPPMSPNCPQLGGGSFNSMNGLISSMRNLQIGKFKSTPQWGVQLRQNLRSPSGSGFYSLPSTPTTGNYELWGKNYEEEPAMERVESGRNLRAKMYAKLSKDNSVEQQMDSTLTPDVGWISELLM 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112358561 112360378 - Tan0011240.1 Tan01g4650 742074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4650 355 Gene3D - 112 184 - -
Tan01g4650 355 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872(InterPro)
Tan01g4650 355 SMART c3hfinal6 116 142 IPR000571 GO:0046872(InterPro)
Tan01g4650 355 SMART c3hfinal6 151 174 IPR000571 GO:0046872(InterPro)
Tan01g4650 355 PANTHER UNKEMPT FAMILY MEMBER 37 354 IPR045234 -
Tan01g4650 355 FunFam Zinc finger CCCH domain-containing protein 66 74 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4650 Tan-Chr1:112358561 Tan08g0088 Tan-Chr8:805672 3.20E-91 dispersed
Tan01g0445 Tan-Chr1:4128067 Tan01g4650 Tan-Chr1:112358561 2.70E-45 transposed
Tan05g0488 Tan-Chr5:3363608 Tan01g4650 Tan-Chr1:112358561 3.50E-49 transposed
Tan01g4650 Tan-Chr1:112358561 Tan02g1668 Tan-Chr2:77610667 5.40E-83 wgd
Tan01g4650 Tan-Chr1:112358561 Tan09g1181 Tan-Chr9:64142276 5.20E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26576 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4650 - - - 0.0