Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4652 ATGGAGGAATATAATAACCATCTAAACGAGAGCTCAAATCCTCGAGGAAATTTCTTGTACGCATCACCAGTTGTTGGGGGGAATTCATCATCAGGTAATTTTGGAAGATCAGGCAATCAGACGGCTCAGATGAGTGTCAATACGTTTCATCTTCAACAAGGAACTGACTGTTTTCAAACCGACCAATCGCATCCGATTGTGAAGACTGAAGCTAGTACTTCTCACCAACAACTTCTCAAATTTCACTACCCTTTAATGAGAGCAGGAGGAGGAGGAGGACACCCGCCGCCGACATGTCGCCCTGACGAAAACGGCGTCGTCGATGTTGAAGCCATTAAGGCCAAAATCGTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTATATGGAATGTCAGAAGGTAGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCTCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCCGGAGAGACCACAAAGGATCCAGAACTCGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGAAGAATCGAATCTCAGCTCAGTTCTCTCTGCAACGGCCCAGTTCGGATCTTCAATTCTGATGAGAAGTGTGAAGCTATCGGATCGTCCGAGGAAGAACAAGACAATAGCGGTGGAGAAACCGAACTACCGGAGATCGACCCGCGAGCTGAAGACAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGCAAACTCCCTAAGGATGCAAGGCAGAAACTTCTTAATTGGTGGGAATTGCATTACAAATGGCCATACCCATCAGAGACAGAGAAGGTAGCATTGGCTGAAACCACTGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTCCCAATGCTGCGCTCTATATCGACGGTCACTACATGACCGATGGCCATTATCGACTCGGACCGTGA 1119 47.18 MEEYNNHLNESSNPRGNFLYASPVVGGNSSSGNFGRSGNQTAQMSVNTFHLQQGTDCFQTDQSHPIVKTEASTSHQQLLKFHYPLMRAGGGGGHPPPTCRPDENGVVDVEAIKAKIVAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGETTKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSSLCNGPVRIFNSDEKCEAIGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAETTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112415028 112420121 + Tan0003148.1 Tan01g4652 742076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4652 372 CDD homeodomain 286 338 IPR001356 GO:0003677(InterPro)
Tan01g4652 372 Pfam Homeobox KN domain 294 333 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan01g4652 372 SMART ELK_2 254 275 IPR005539 GO:0003677(InterPro)
Tan01g4652 372 SMART HOX_1 276 341 IPR001356 GO:0003677(InterPro)
Tan01g4652 372 SMART KNOX1_2 110 154 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan01g4652 372 Gene3D - 279 341 - -
Tan01g4652 372 MobiDBLite consensus disorder prediction 226 250 - -
Tan01g4652 372 ProSiteProfiles ELK domain profile. 254 274 IPR005539 GO:0003677(InterPro)
Tan01g4652 372 ProSiteProfiles 'Homeobox' domain profile. 274 337 IPR001356 GO:0003677(InterPro)
Tan01g4652 372 Pfam ELK domain 254 275 IPR005539 GO:0003677(InterPro)
Tan01g4652 372 Pfam KNOX2 domain 165 211 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan01g4652 372 ProSitePatterns 'Homeobox' domain signature. 312 335 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan01g4652 372 Pfam KNOX1 domain 111 153 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan01g4652 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 344 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g4652 372 FunFam Homeobox protein knotted-1-like 2 279 341 - -
Tan01g4652 372 SMART KNOX2_2 161 212 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan01g4652 372 SUPERFAMILY Homeodomain-like 275 350 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4652 Tan-Chr1:112415028 Tan04g1268 Tan-Chr4:12193149 2.70E-72 dispersed
Tan03g2274 Tan-Chr3:77008845 Tan01g4652 Tan-Chr1:112415028 1.40E-75 transposed
Tan01g4652 Tan-Chr1:112415028 Tan02g1669 Tan-Chr2:77897806 8.20E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26577 PF03791 KNOX2 1.40E-25 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4652 - - - 0.0