Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4653 ATGGATGGCGAGGGGCTTCATCTTGGGCTGGGGCAGGGATCGAATGATTCAGTACGGTCGCTCGTACCGGAAGTGGCTGGCGTGAAGAAGAAGCTGCAGGTTTTGAAGTTTGATGACATTTTGCCTTCGTTAACGTTGGGATTGTCGATTGTTGTCGAGAAGAGCGCCGCCGCCGAAGAGTTGATCCAGCAGGGCTCTTCAGGAAGTCCGGTGTCGTCGTTTTCGAATTCGTCGGGGTATAAGAGGGAGAGAGACGGCTGGGGCAGCGAAGAGAAGGAGGCGGAGGCAGAGGCAGAGGTGTATATGGAGAGGACGTGTATGAAAGTTGCAGAGGAAGATGAAGATGGAAATCCGAGGAAGAAACTTAGACTTACTAAGGAACAGTCCGCCATTTTAGAAGATAACTTCAAAGAACATTCAAGTCTCAGTCCTAAGCAAAAGCAGGATTTGGCAAGACAGTTAAACCTAAGGCCAAGACAAGTGGAAGTATGGTTCCAAAACAGAAGAGCCAGAACCAAACTGAAGCAAACAGAAATGGACTGTGAATTACTGAAAAAATGCTGTGAAAAGCTCAAAGAAGAGAACACAAGGCTTCAAAAGGAGCTTCAAGAGCTTAAATCACTCAAATTAACTGCTCCGCCGTTCTGTATGCAGCTACAAGCCGCCACCCTTACCGTTTGCCCTTCCTGTGAGAGGTCCATTTGCGGCGGCAGCGGCGATGCATCTCCGGTCACCACCTTCTCGATTGGACCGAAGCCTCACTTTCTCAAATTCCCCTTTAACCACCCATCGGCGGCTTGTTAG 804 49.38 MDGEGLHLGLGQGSNDSVRSLVPEVAGVKKKLQVLKFDDILPSLTLGLSIVVEKSAAAEELIQQGSSGSPVSSFSNSSGYKRERDGWGSEEKEAEAEAEVYMERTCMKVAEEDEDGNPRKKLRLTKEQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCERSICGGSGDASPVTTFSIGPKPHFLKFPFNHPSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112426228 112427914 - Tan0007655.1 Tan01g4653 742077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4653 267 Coils Coil 174 211 - -
Tan01g4653 267 FunFam Homeobox-leucine zipper protein 18 105 180 - -
Tan01g4653 267 Pfam Homeobox associated leucine zipper 175 208 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g4653 267 SMART HOX_1 117 179 IPR001356 GO:0003677(InterPro)
Tan01g4653 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 46 236 IPR050762 -
Tan01g4653 267 SMART halz 175 218 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g4653 267 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan01g4653 267 Pfam Homeodomain 119 173 IPR001356 GO:0003677(InterPro)
Tan01g4653 267 MobiDBLite consensus disorder prediction 61 82 - -
Tan01g4653 267 Gene3D - 123 173 - -
Tan01g4653 267 SUPERFAMILY Homeodomain-like 116 183 IPR009057 -
Tan01g4653 267 MobiDBLite consensus disorder prediction 61 95 - -
Tan01g4653 267 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677(InterPro)
Tan01g4653 267 CDD homeodomain 118 176 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1446 Tan-Chr1:14509664 Tan01g4653 Tan-Chr1:112426228 4.90E-60 dispersed
Tan01g4653 Tan-Chr1:112426228 Tan06g0528 Tan-Chr6:4040918 2.60E-45 dispersed
Tan10g1877 Tan-Chr10:59614868 Tan01g4653 Tan-Chr1:112426228 3.10E-52 transposed
Tan01g4653 Tan-Chr1:112426228 Tan03g1718 Tan-Chr3:73128639 2.40E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26578 PF00046 Homeodomain 1.70E-17 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4653 K09338 - csv:101212868 351.288