Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4658 ATGACGATTATGGTTGCCGCCGACCGCAAGTACCGGCGGAGCCCTAGAAAGCCCTTGCTCCCTGAGAAATGCGACCACCAAGACCAAGAGCCTCTCGAGGTAGGTTTAGATGGCGCATCGTTCTCCGGCGCCGTCTTCAACCTCTCGAGCACTATCGTCGGCGCCGGAATTATGGCTCTCCCGGCGGCCGTGAAGCAATTAGGTCTAATTCCGGGATTGGTCATGATCATTCTGGGATCCACGTTGACGGAGTTGTCAATTGACTTCATCCTGAAATTCTCTCGGGCTTCCAAATCCGTTACCTACGCCGGCACCGTCGGCGACTCTCTCGGCGGCGCCGGTCGGACCCTCTTGCAGGTTTGCATCGTGGTCAACAACTTGGGCATGCTCGTCGTCTACATGATCATCATCGGCGATGTGTTGTCAGGAACATCGGCAAATAACGTCCATCATAAGGGTGTAATGGAAGAATGGTTCGGTCAACATTGGTGGACCAGCCGCATTTCCTTAATGCTTTTCACGACGCTTCTAATTTTTGCGCCTCTAATATCCTTTAAGCGAGTAGATTCTTTGAGGTACACATCAGCATTGTCAGTGGGCTTGGCCATTGTCTTTGTGGCAATCACTGCTGGCGTAGCGATCGCGAAATTGATGGATGGGAGTATCGGAATGCCACGTTTGATGCCGAAACTCATTGATTGGGCGTCATTTTGGCAACTTTTTACCACTGTTCCAATCCTAGTCACTGCCTATATCTGTCACCATAATGTTCACCCCATTGAGAATGAGCTAAAAGATCCCACACAAATGAAGTCGATAGTTCGAACATCTCTAACGATATGCTCATCGATATATATCGCGACGAGCATCTTCGGATTCCTCCTGTTTGGAGACCAAACGCTAGATGATGTACTTGCCAATTTTGATGGAGACCTTGGACTTCCATACAGCTCATTGCTTGATGATATTGTAAGGGTGAGCTATGGCATCCACCTGATGCTTGTATTTCCAATTGTTTTTTTCTCTCTTCGCCTCAACGTTGACGGTCTGCTCTTTCCCTATGCCATACCTATCGCTTTCGATGATCAACGTTTCTTCTCGATAACTATAGCTCTCATGAGTTTCATCTTCATTGGAGCTAACTTCGTTCCCAGCATCTGGGATGCCTTCCAACTCACTGGAGCCACTGCTGCCATCTCTGTTGGCTTCATATTTCCTGCTGCTCTCGTCCTCAGGGATACTTGTGGGATTGCATCAAAGAAAGACAGAATGATAGCATGGATAATGTTCCTATTAGCTATTTCGTCGAGTATGGCCGCAATCTCAAGCGATATCTACAGTACTTACGTGATTGAGCATCGCGCTTGA 1368 48.25 MTIMVAADRKYRRSPRKPLLPEKCDHQDQEPLEVGLDGASFSGAVFNLSSTIVGAGIMALPAAVKQLGLIPGLVMIILGSTLTELSIDFILKFSRASKSVTYAGTVGDSLGGAGRTLLQVCIVVNNLGMLVVYMIIIGDVLSGTSANNVHHKGVMEEWFGQHWWTSRISLMLFTTLLIFAPLISFKRVDSLRYTSALSVGLAIVFVAITAGVAIAKLMDGSIGMPRLMPKLIDWASFWQLFTTVPILVTAYICHHNVHPIENELKDPTQMKSIVRTSLTICSSIYIATSIFGFLLFGDQTLDDVLANFDGDLGLPYSSLLDDIVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPYAIPIAFDDQRFFSITIALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALVLRDTCGIASKKDRMIAWIMFLLAISSSMAAISSDIYSTYVIEHRA 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112524063 112528253 + Tan0008844.1 Tan01g4658 742082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4658 455 PANTHER AMINO ACID TRANSPORTER 38 439 - GO:0003333(PANTHER)|GO:0015179(PANTHER)
Tan01g4658 455 Pfam Transmembrane amino acid transporter protein 39 437 IPR013057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4658 K14207 - - csv:101204458 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4658 Tan-Chr1:112524063 Tan04g1390 Tan-Chr4:15669924 7.70E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g1257 . 34 426 Amino Acid/Auxin Permease AAAP Family AT2G41190 65.9 5.7e-142 501.9
Tan08g1259 . 72 433 Amino Acid/Auxin Permease AAAP Family AT2G41190 56.7 1.3e-109 394.4
Tan01g4658 . 18 449 Amino Acid/Auxin Permease AAAP Family AT3G30390 59.3 2.5e-144 509.6
Tan07g1198 . 40 429 Amino Acid/Auxin Permease AAAP Family AT3G28960 61.1 1.3e-136 483.8
Tan07g1200 . 29 433 Amino Acid/Auxin Permease AAAP Family AT3G28960 58.6 2.7e-134 476.1
Tan07g1199 . 1 334 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.0 1.5e-113 407.1
Tan04g1078 . 14 378 Amino Acid/Auxin Permease AAAP Family AT3G28960 50.7 4.1e-103 372.5
Tan01g4658 . 37 449 Amino Acid/Auxin Permease AAAP Family AT5G38820 58.6 4.8e-140 495.4
Tan06g0444 . 3 490 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.0 1.1e-182 637.1
Tan04g0626 . 56 559 Amino Acid/Auxin Permease AAAP Family AT5G02180 51.1 2.0e-132 470.3
Tan11g0897 . 34 561 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.1 7.5e-132 468.4
Tan04g0626 . 1 492 Amino Acid/Auxin Permease AAAP Family AT2G39130 68.8 2.2e-183 639.4
Tan11g0897 . 1 495 Amino Acid/Auxin Permease AAAP Family AT2G39130 65.5 5.5e-174 608.2
Tan07g1199 . 1 334 Amino Acid/Auxin Permease AAAP Family AT5G15240 60.7 5.5e-109 391.7
Tan07g1200 . 100 433 Amino Acid/Auxin Permease AAAP Family AT5G15240 60.7 5.5e-109 391.7
Tan07g1198 . 96 429 Amino Acid/Auxin Permease AAAP Family AT5G15240 60.7 5.5e-109 391.7
Tan04g1390 . 10 432 Amino Acid/Auxin Permease AAAP Family AT3G56200 58.5 3.2e-133 472.6
Tan04g1388 . 10 238 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.1 2.7e-68 256.9
Tan04g1389 . 4 193 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.5 6.3e-57 219.2
Tan11g0897 . 1 509 Amino Acid/Auxin Permease AAAP Family AT3G54830 62.4 3.4e-169 592.4
Tan04g0626 . 1 506 Amino Acid/Auxin Permease AAAP Family AT3G54830 63.1 8.5e-168 587.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30