Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4661 ATGGGTGATCTCGAAAATGACGAAATGGGTTTTAGAAATTCGAATGAGGGGTTACTGAATTGTCCATCTTCGGATAAAATTTCAGGAACAATGGCGATGGGTTCTTTCTTTGGGTCTGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGAGCAGCTTCAATGGTTTCCTCTCATGGAGAATTTTCAAATTCTTTTCCTGTTGTTTTGGACAACCATGGAGTAGGAAGTGGCACAACACAAACTGTTCAATATCCAACAGATTTGGAGAAATTGCCATCTTTTGGCAGTGGGAATTACTCAGACATGTTTAGTTCTTTTGGTCTTGCTGGCCAGATTCTTGGAGGGTGTTCTTCAAATTACAGAAATGGAGGAACTGCGAACACTGCTCAAACATCACAAGAAAATTTACCACCATCTGGTGAAGAAGCTGCTTTAGGATCACCAAATGGTAAAATCAGGAAACGAGCCCTTGATTCCACTTTCCCATTTAGCCCAAATAAGAAATCTGAAGGGAAATTGAAAAAGGATGTTTCTGAGGATACTTCCAGTACACAAGAAGAGAAAAATGCAGAAATGGAGCAGAATTTACGTGGTAAGGCAACTGGAAAACAAGCTAAAGAGAAATCCAATAACAGTGGAGAAGCTCCCAAGGAAAATTACATTCATGTGCGAGCTAGAAGAGGGCAGGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAAAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAACATCGATATCGAGAGGATTTTATCCAAAGATATTTTCCACGCACGGGGCAGCAATGGAACTGTACTTGGATTTGATCCCGGGTTGAGTTCGGTTCCCCCGGTCCCCCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATATGCCAACCACATCCACGCAGTTTCATCCTTTGCCTCAGACTATGTTAGAAAGCGATCTTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCATTGACAATTTGGGACCAAATGGAAGGTTGAAACCAGAGCGCTAG 1194 42.96 MGDLENDEMGFRNSNEGLLNCPSSDKISGTMAMGSFFGSGWDPLVSLGQSENFGAASMVSSHGEFSNSFPVVLDNHGVGSGTTQTVQYPTDLEKLPSFGSGNYSDMFSSFGLAGQILGGCSSNYRNGGTANTAQTSQENLPPSGEEAALGSPNGKIRKRALDSTFPFSPNKKSEGKLKKDVSEDTSSTQEEKNAEMEQNLRGKATGKQAKEKSNNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSSVPPVPPHRMFQFQGTMSNMPTTSTQFHPLPQTMLESDLQSLLQMGFDSGSAIDNLGPNGRLKPER 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112598895 112601787 - Tan0021699.1 Tan01g4661 742085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4661 397 MobiDBLite consensus disorder prediction 172 208 - -
Tan01g4661 397 MobiDBLite consensus disorder prediction 128 142 - -
Tan01g4661 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 298 IPR036638 GO:0046983(InterPro)
Tan01g4661 397 Pfam Helix-loop-helix DNA-binding domain 236 284 IPR011598 GO:0046983(InterPro)
Tan01g4661 397 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 127 358 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan01g4661 397 Gene3D - 230 303 IPR036638 GO:0046983(InterPro)
Tan01g4661 397 CDD bHLH_AtBPE_like 223 308 - -
Tan01g4661 397 MobiDBLite consensus disorder prediction 128 224 - -
Tan01g4661 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 283 IPR011598 GO:0046983(InterPro)
Tan01g4661 397 SMART finulus 239 289 IPR011598 GO:0046983(InterPro)
Tan01g4661 397 FunFam Basic helix-loop-helix transcription factor 230 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4661 Tan-Chr1:112598895 Tan02g1689 Tan-Chr2:79311745 1.00E-45 dispersed
Tan01g4661 Tan-Chr1:112598895 Tan01g4662 Tan-Chr1:112598895 2.60E-203 tandem
Tan01g4661 Tan-Chr1:112598895 Tan02g1688 Tan-Chr2:79311745 8.90E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26580 PF00010 HLH 4.10E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4661 - - - 0.0