Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4663 ATGACTATGGAAGTTACTTCTGAGTCTCAACAACATTCTCACTACCACAACCAAAACCAAGCAACTTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCAGCACTATAATGGTGATTTGCTAATTTCTCCCTTGTCTGTTATGCCACTCAAGTCAGATGGATCTCTTTGCTTCATGGAGTCAATCAGCACATCACAACCTCAAGAAATATTGCCAAATATCTCACCAAAGCTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGAGAGGCCACAGCTTTGAGCTTAGACAGCATATATTACAATCAAAATGCTGAGGCTGATTCACAGAGACAACATTCACTAGATCTTTTTAAGCAACAAGAGCAACAGCATATTCTTTTTCAATCTCAGCGATACTATTCTGGAATGTTCCAGTTTCCAGCTGAGGATGCCAACAAGGAGTCTCATATTGCAAGCTATTGTTCTGAAATTCGACAAGCTATGGAGCAGCGTATCAATGGCTGCTATGGAGGGATGAATTCCCAAGACTTGCAGCCACTTAGCTTGTCAATGAGTCCTGGTTCTCAGTCTAGTTGCGTTACTGCTCCAAGCCAAATTTCTCATCCTGGATCAGCCAACATGGAAACAAAGAAAAGGGGTCTGCCTGGTCAAAAGCAGCCGGTCCATCGGAAGTCGATCGACACGTTCGGACAAAGAACTTCGCAGTACAGAGGTGTTACGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGTTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGTTTATCTCGGTGGTTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACATTTAAACTTCCCGTTAAAGAACTATCAAGTTGAAATCGAAGAAATGAAGAAGATGAACCGCCAAGAATATGTTGCGCACCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGAAGAGTCGCCGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCAGCTGAAGCCTATGACATAGCAGCCATCAAGTTCCGCGGTGCAAACGCCGTTACAAACTTCGACACTTCAAGGTATAATGTAGAACGGATCATGGCGAGCAGCAGCCTCCTTTCGGGAGAGTTTGCAAGACGAAACAAAGAGCACAAACCAACCAACATGATCGAGCACAAAGAACCGAAACAGAACATCGCTCAAATCGACCCCTCTGAGATATCCAACAGTAACAACTTAGATTGGAGGACAGCATTCCACGACACCCTGCTGCTGGATCCAAACGCAACCGTTGAATCCATAGATCAAAAGTCCATGACTTCCTGCGGTTACTTAAACCATCTGATTGGAGTCGAAACTGCAACAGTGAACGATTCGAGCAAGTTCAAGGCACATTTCTCCAATGCTTCCTCTGTGGTGAGCAGCCTGAGCAGCTCAAGGGAAACAAGTCCTGATAAGTCAAATGCCTCAGCCTCATCCTCAGTGTTATTAACAAAAGCAGCTCCATTTGGAAGCAGCAATGGAAGCATTTGGCTGCCATCAACCCAAATGAGGCCATCTCCTATTTCTTTGCCTGTTGTGTCAAGTGTTTGGAATGATGTCTGA 1722 44.83 MTMEVTSESQQHSHYHNQNQATSNTMSNSFLASQHYNGDLLISPLSVMPLKSDGSLCFMESISTSQPQEILPNISPKLEDFLGGATHGREATALSLDSIYYNQNAEADSQRQHSLDLFKQQEQQHILFQSQRYYSGMFQFPAEDANKESHIASYCSEIRQAMEQRINGCYGGMNSQDLQPLSLSMSPGSQSSCVTAPSQISHPGSANMETKKRGLPGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQVEIEEMKKMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGANAVTNFDTSRYNVERIMASSSLLSGEFARRNKEHKPTNMIEHKEPKQNIAQIDPSEISNSNNLDWRTAFHDTLLLDPNATVESIDQKSMTSCGYLNHLIGVETATVNDSSKFKAHFSNASSVVSSLSSSRETSPDKSNASASSSVLLTKAAPFGSSNGSIWLPSTQMRPSPISLPVVSSVWNDV 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112615755 112618574 - Tan0017606.1 Tan01g4663 742087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4663 573 MobiDBLite consensus disorder prediction 1 21 - -
Tan01g4663 573 PRINTS Ethylene responsive element binding protein signature 378 398 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 ProSiteProfiles AP2/ERF domain profile. 338 396 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 MobiDBLite consensus disorder prediction 183 223 - -
Tan01g4663 573 FunFam AP2-like ethylene-responsive transcription factor 337 398 - -
Tan01g4663 573 MobiDBLite consensus disorder prediction 183 206 - -
Tan01g4663 573 SUPERFAMILY DNA-binding domain 337 397 IPR016177 GO:0003677(InterPro)
Tan01g4663 573 CDD AP2 235 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 FunFam AP2-like ethylene-responsive transcription factor ANT 235 304 - -
Tan01g4663 573 SUPERFAMILY DNA-binding domain 235 303 IPR016177 GO:0003677(InterPro)
Tan01g4663 573 CDD AP2 337 398 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 129 446 - -
Tan01g4663 573 Pfam AP2 domain 236 294 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 Pfam AP2 domain 339 388 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 Gene3D AP2/ERF domain 338 398 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 Gene3D AP2/ERF domain 235 304 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 ProSiteProfiles AP2/ERF domain profile. 236 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 SMART rav1_2 338 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4663 573 SMART rav1_2 236 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4663 Tan-Chr1:112615755 Tan03g1702 Tan-Chr3:72989291 7.10E-125 dispersed
Tan01g4663 Tan-Chr1:112615755 Tan02g1691 Tan-Chr2:79514328 1.10E-157 wgd
Tan01g4663 Tan-Chr1:112615755 Tan03g1701 Tan-Chr3:72988612 1.00E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26582 PF00847 AP2 1.30E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4663 K09285 - csv:101212143 877.47