Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g4668 | ATGGATAATCTGTCTCAGTCTTCAGGCGGGCAGTTTCGGCCGATCATCCCAGCACAACCAGGCCAGACGTTCATCGCATCATCTGCCCCACAGTTCCAGTTAGCAGGGCAGAATATATCTTCTTCAAATGTTGGAGTTCCAGCTGGTCAAGTCCAGCCACATCAATATCCTCAATCAATGCCACAGTTAGTGCCAAGACCAGGCCATCCTAGCTATGTCACTTCTTCGTCCCAGGGTATTCAAATGCCTTATATTCAGACAAGGCCTCTTACTTCTCTTCCACCTCAGACTCAGCAAAATGTGCCTGCACCAAATAATCATATGCATGGCTTGGGTGCTCATGGACTACCTCTTTCTTCACCATATACTTTCCAGCCAATGTCACAAATGCATGCACCCGTTGGAGTTGGTAATAACCAACCTTGGCCGTCTTCTGTAAGCCAGGCTACAAACCCTGTCTCACAGATCGAGCAAGCTAACCAGCATTTGTCAGTTACAGCTGTTAATCCAGCTGCTAATGTTCCCGTCTTCAATCAGCAGTCTTCATCTGATTGGCAAGAGCATTCATCAGCTGATGGAAGAAGATACTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAGAAGCCATTGGAACTTATGACACCACTTGAGCGAGCTGATGCATCAACTGTGTGGAAGGAATTTACAGCTCCAGATGGAAGAAAGTACTATTACAATAAGGTGACAAAAGAATCAAAGTGGACTATGCCAGAAGAACTGAAGTTGGCTCGTGAGCAGGCTCAGAAAGAAGCTGTCCAAGGAACACAAACAGATATGGCTGTTGCAACGCCTCAACCTATGCCTGCTGTTGGTCTCTCCCATGCTGAAACACCGGCAATTTCTTCCATCAACTCCAGCATTTCTCCAACAGTTTCTGGGGTTGCATTGAGTCCAGTTCCAGTCAATCCTTTTGTTTCTGTATCCAATTCTCCTTCAGTAGTGGTTTCTGGGTCATTAGCAATTACCGGCGTGCCCATTGCTTCAACAACTAGTGTGACTGGATTACAGCCTTCTGTTATACCAGTTTCTTCTCAATCTGTCGCTGCTTCTGGAGGTACTGGTCCTCCTGCTGTGGTCCATGCCAATGCTTCGTCAGTGACTGCTTTTGAAAGTCTTGCATCTCAAGATGTAAAAAATTCTATTGATGGAACTTCTACGGAGGACATTGAGGAAGCCAGGAAGGGAATGGCAGTTGCAGGAAAAGTTAATGAGACTGTTTTAGAGGAAAAATCTGCTGATGATGAACCATTGGTATTTGCCAACAAGCTGGAGGCAAAGAATGCATTTAAAGCGCTTCTGGAATCTGTAAATGTTCAGTCTGATTGGACGTGGGAGCAGGCCATGCGAGAAATAATTAATGACAAAAGATATGGCGCCTTGAAAACTCTTGGTGAGCGGAAGCAAGCTTTCCATGAGTATTTAGGACATAGGAAAAAATTGGATGCAGAAGAAAGACGCATAAGACAGAAAAAAGCTCGTGAGGAATTCACCAAGATGTTGGAAGAGTCCACAGAACTCACATCATCTACCAGATGGAGCAAAGCTATTAGTATGTTTGAGAATGATGAACGGTTCAAAGCTGTTGAACGTTCTAGAGACCGGGAGGATCTTTTTGAAAGCTACATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTACTGAATATAGGAAATTTCTCGAGTCATGTGATTACATAAAGGTGAGCAGCCAGTGGCGGAAAGTTCAAGATCGATTAGAAGATGATGAAAGATGCTCATGTCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATTCGTGACTTGGAAAAGGAGGAAGAGGAACAGAAGAAGATACAAAAGGAACGTGTGCGAAGAATTGAAAGAAAAAACCGCGACGAGTTTCGCAAACTCATGGAAGAACACATTACTGCTGGTGTTCTTACAGCTAAAACTTTCTGGCGTGATTACTGTTTGAAGGTTAAGGAGTTGCCTCAGTATCAAGCCGTCGCTTCTAATATATCTGGCTCAACACCAAAGGACTTGTTTGAGGATGTTCTGGAGGAATTAGAGAATAAGTATCATGAAGAAAAAGCTCAGATAAAAGATGTGATGAAGGCAGCGAAGATTGCCATCACTTCATCGTGGACATTTGATGACTTTAAAGCTGCCATTGAAGAGGGTGGTTCTCTTGCAGTTTCAGATATAAATTTTAAGCTTCTATATGAGGACTTACTAGAAAGAGCCAGAGAAAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTTTGGCTGATGACTTCTCAAGGCTGCTTCAGTCATTCAAGGAGATTACAACTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGAAGAGAGTGAAGAGTACAGATCAATTGGGGAAGAGAGCTATGCGAAGGAAGTTTTTGAGGAATACATAGTGCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGCGTGAGGAGGACAAGGCTAAAAAGGAAAAAGAACGCGAGGAAAAAGAGAAGCGGAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAAGAAAAGGGTCGGGTTAAGAAGGATGAAACAGATAGTGAAAATATAGATGCAAGCGAAACTCATGTCTACAGAGAAGACAAGAAAAGGGAAAAAGACAAAGACAAAGACAGGAAACATCGTAAGCGGCATCATAGTGCCACTGACGATGGTGGTTCTGATAAAGATGACAGAGAGGAGTCTAAGAAGTCCCGCAAACATGGCAGTGACCGAAAAAAGTCAAGGAAGCATGCATATTCACCTGAATCAGACAGTGAGAGTAGGCACAGAAGGCACAAGAGAGATCATCGAGATGGTTCCCGTAGAAATGGCGGACACGATGAACTTGAAGATGGGGAGCTTGGAGAGGATGGGGAAATTCAATAG | 2988 | 43.54 | MDNLSQSSGGQFRPIIPAQPGQTFIASSAPQFQLAGQNISSSNVGVPAGQVQPHQYPQSMPQLVPRPGHPSYVTSSSQGIQMPYIQTRPLTSLPPQTQQNVPAPNNHMHGLGAHGLPLSSPYTFQPMSQMHAPVGVGNNQPWPSSVSQATNPVSQIEQANQHLSVTAVNPAANVPVFNQQSSSDWQEHSSADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTMPEELKLAREQAQKEAVQGTQTDMAVATPQPMPAVGLSHAETPAISSINSSISPTVSGVALSPVPVNPFVSVSNSPSVVVSGSLAITGVPIASTTSVTGLQPSVIPVSSQSVAASGGTGPPAVVHANASSVTAFESLASQDVKNSIDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLVFANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFTKMLEESTELTSSTRWSKAISMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNITEYRKFLESCDYIKVSSQWRKVQDRLEDDERCSCLEKLDRLLIFQDYIRDLEKEEEEQKKIQKERVRRIERKNRDEFRKLMEEHITAGVLTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLEELENKYHEEKAQIKDVMKAAKIAITSSWTFDDFKAAIEEGGSLAVSDINFKLLYEDLLERAREKEEKEAKRRQRLADDFSRLLQSFKEITTSSNWEDSKQLFEESEEYRSIGEESYAKEVFEEYIVHLQEKAKEKERKREEDKAKKEKEREEKEKRKEKERKEKEREREKEKGRVKKDETDSENIDASETHVYREDKKREKDKDKDRKHRKRHHSATDDGGSDKDDREESKKSRKHGSDRKKSRKHAYSPESDSESRHRRHKRDHRDGSRRNGGHDELEDGELGEDGEIQ | 995 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 112644800 | 112659628 | + | Tan0022410.1 | Tan01g4668 | 742092 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g4668 | 995 | Gene3D | FF domain | 500 | 561 | IPR036517 | - | |
| Tan01g4668 | 995 | ProSiteProfiles | FF domain profile. | 436 | 490 | IPR002713 | - | |
| Tan01g4668 | 995 | Gene3D | FF domain | 436 | 491 | IPR036517 | - | |
| Tan01g4668 | 995 | SUPERFAMILY | FF domain | 495 | 565 | IPR036517 | - | |
| Tan01g4668 | 995 | Pfam | WW domain | 226 | 251 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | Pfam | WW domain | 183 | 210 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | MobiDBLite | consensus disorder prediction | 949 | 965 | - | - | |
| Tan01g4668 | 995 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 179 | 212 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | MobiDBLite | consensus disorder prediction | 836 | 908 | - | - | |
| Tan01g4668 | 995 | SUPERFAMILY | FF domain | 563 | 632 | IPR036517 | - | |
| Tan01g4668 | 995 | SUPERFAMILY | WW domain | 213 | 254 | IPR036020 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | ProSiteProfiles | FF domain profile. | 643 | 706 | IPR002713 | - | |
| Tan01g4668 | 995 | SUPERFAMILY | WW domain | 184 | 218 | IPR036020 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | Gene3D | FF domain | 770 | 845 | IPR036517 | - | |
| Tan01g4668 | 995 | Gene3D | - | 222 | 266 | - | - | |
| Tan01g4668 | 995 | Gene3D | - | 178 | 221 | - | - | |
| Tan01g4668 | 995 | PANTHER | PRE-MRNA-PROCESSING PROTEIN PRP40 | 179 | 811 | IPR039726 | GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005685(PANTHER)|GO:0045292(InterPro)|GO:0071004(PANTHER) | |
| Tan01g4668 | 995 | FunFam | Pre-mRNA-processing protein 40A | 492 | 565 | - | - | |
| Tan01g4668 | 995 | SUPERFAMILY | FF domain | 638 | 713 | IPR036517 | - | |
| Tan01g4668 | 995 | SMART | FF_2 | 645 | 706 | IPR002713 | - | |
| Tan01g4668 | 995 | SMART | FF_2 | 571 | 625 | IPR002713 | - | |
| Tan01g4668 | 995 | SMART | FF_2 | 436 | 490 | IPR002713 | - | |
| Tan01g4668 | 995 | SMART | FF_2 | 503 | 558 | IPR002713 | - | |
| Tan01g4668 | 995 | SMART | FF_2 | 777 | 832 | IPR002713 | - | |
| Tan01g4668 | 995 | Coils | Coil | 619 | 647 | - | - | |
| Tan01g4668 | 995 | SUPERFAMILY | FF domain | 778 | 839 | IPR036517 | - | |
| Tan01g4668 | 995 | ProSiteProfiles | FF domain profile. | 777 | 832 | IPR002713 | - | |
| Tan01g4668 | 995 | Pfam | FF domain | 573 | 622 | IPR002713 | - | |
| Tan01g4668 | 995 | Pfam | FF domain | 438 | 487 | IPR002713 | - | |
| Tan01g4668 | 995 | Pfam | FF domain | 505 | 555 | IPR002713 | - | |
| Tan01g4668 | 995 | Pfam | FF domain | 782 | 829 | IPR002713 | - | |
| Tan01g4668 | 995 | Pfam | FF domain | 647 | 702 | IPR002713 | - | |
| Tan01g4668 | 995 | ProSiteProfiles | FF domain profile. | 503 | 558 | IPR002713 | - | |
| Tan01g4668 | 995 | ProSitePatterns | WW/rsp5/WWP domain signature. | 185 | 210 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | Coils | Coil | 697 | 724 | - | - | |
| Tan01g4668 | 995 | MobiDBLite | consensus disorder prediction | 836 | 995 | - | - | |
| Tan01g4668 | 995 | CDD | WW | 183 | 212 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | Gene3D | FF domain | 635 | 718 | IPR036517 | - | |
| Tan01g4668 | 995 | Gene3D | FF domain | 562 | 634 | IPR036517 | - | |
| Tan01g4668 | 995 | ProSiteProfiles | FF domain profile. | 564 | 625 | IPR002713 | - | |
| Tan01g4668 | 995 | MobiDBLite | consensus disorder prediction | 918 | 940 | - | - | |
| Tan01g4668 | 995 | Coils | Coil | 552 | 572 | - | - | |
| Tan01g4668 | 995 | Coils | Coil | 823 | 886 | - | - | |
| Tan01g4668 | 995 | SUPERFAMILY | FF domain | 428 | 489 | IPR036517 | - | |
| Tan01g4668 | 995 | CDD | WW | 226 | 253 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | FunFam | Pre-mRNA-processing protein 40A | 566 | 634 | - | - | |
| Tan01g4668 | 995 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 220 | 253 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | FunFam | Pre-mRNA-processing protein 40A | 636 | 717 | - | - | |
| Tan01g4668 | 995 | Coils | Coil | 759 | 783 | - | - | |
| Tan01g4668 | 995 | SMART | ww_5 | 221 | 253 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | SMART | ww_5 | 180 | 212 | IPR001202 | GO:0005515(InterPro) | |
| Tan01g4668 | 995 | FunFam | pre-mRNA-processing protein 40A isoform X1 | 435 | 490 | - | - | |
| Tan01g4668 | 995 | FunFam | Pre-mRNA-processing protein 40A | 771 | 844 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g4668 | K12821 | - | - | csv:101203479 | 1548.49 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g0610 | Tan-Chr1:5561089 | Tan01g4668 | Tan-Chr1:112644800 | 2.30E-06 | dispersed | |
| Tan01g4668 | Tan-Chr1:112644800 | Tan01g4669 | Tan-Chr1:112644800 | 0.00E+00 | tandem | |
| Tan01g0609 | Tan-Chr1:5561089 | Tan01g4668 | Tan-Chr1:112644800 | 2.30E-06 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g614 | . | Blo12g00995 | . | Bda03g00163 | . | Bpe04g00145 | . | . | . | . | Cma01g01771 | Cma09g00307 | Car01g01380 | . | . | Cpe06g00216 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone17ag0900 | Cone20ag0242 | Lsi04g01460 | Csa04g02500 | . | . | . | . | . | . | . | Bpe05g00461 | . | . | Sed13g1825 | Cmo01g01829 | Cmo09g00308 | . | . | . | Car09g00259 | . | Cpe02g00234 | Bhi09g03198 | Tan01g4668 | Cmetu07g0441 | . | Hepe01g1848 | Mch11g0381 | . | . | . | . | . | . | . | . | . | . | Chy07g00208 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007062 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 37 |