Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4674 ATGTCATGGTTGGCTCGCTCCATTGCTAACACCCTTCGTCTTGAAGACGAAGACGAAGATGACGAACACAACGACGTCGTATCATCCATTCCCTCCGATCCTCCATCTCCTTCTCCTTCCACCACTTCTCGCAATCAGATGGAATCCGAACTCGACGACGAAGCATTATCTCGCGGCGTCAAAGAGGATTTGACTGAACTCAAACAAACCCTAACCCGTCAATTTTGGGGCGTCGCCTCTTTCCTTGCGCCTCCACCGCCACCGCCACCGCCGCCGCCTCATCATCCCCGCCCGGACGGGGATCTGGCTGCTCGTCCCTATTCGAAGCCGTTCGAGGCGTCTAATCAGTCTGATCCGTCGATCTCCGGGGATGAAGAGGACGGAGAGGAGCCGTCCGATCCGGTTGAGGTTTTGAAGATGCGTTCCAATCATGACGCCTATGCGAAATCGTGGTATTTACAAGGTGGGGATTGCTATGAGGTGGATTGGGAAGACGCTGTTGGGATCACTGATGAAGTGCTGACGTTTGCGACGAACATCGCAATGCACCCTGAGACTTGGATTGATTTTCCCATTGACGAGGAGGAGGACAACGACGATTTTGAAATGTCTGATGCCCAAAAAGAGCATGCTTTCACTATTGAACGTCTTGCTCCTAGATTAGCTGCTCTCAGAATTGAGCTCTGTCCTTGCCATATGAGTGAGAGTTACTTTTGGAAAGTCTATTTTGTGCTCCTGCATTCAAGACTCAATAAGCATGATGCTGAGGTTTTATCTACTCCACAGGTAGCAGCAGCCAGATCAATGTGGATGCAGGAATTACAAAAGAAAACCAAGCCAGAGTCTTTCTGGTGTGGAAGAGACACTTTTGAATTAAAGGACAGCTCTGATGTGCTGCAAGACGATGGTAGTCCCATGGGCCATGAAACTCATTCTGGATCTACGCTGCCTTGGACATTTACATCTGAGCCAAGCATGTCGTCTATGTCAAGCAATTATGAGACAGAAAAATACCAAATCGATACTTCTGAAACACAATTCATTGATAAGTCTGTCATTGTCGAAAAACCTATAATTAAAAATGAGGATAAAAACTTGACGATTGGGTCTTCTTCAAAATTCCTTGTTCAGAACTACGAGGACGAGTCAGATAATGACTGGCTAGAGGAAGACTCTGAGTTGGGCGGTTGTAATGGGACCATCCTCCCTCTGGAGAACGAAGAAGATATTTCTTTCAGTGATCTCGAGGACGATGATATGGTTCTGCCAGCTAAATTCAAGATTGCTTCAAAAGAATAG 1299 47.19 MSWLARSIANTLRLEDEDEDDEHNDVVSSIPSDPPSPSPSTTSRNQMESELDDEALSRGVKEDLTELKQTLTRQFWGVASFLAPPPPPPPPPPHHPRPDGDLAARPYSKPFEASNQSDPSISGDEEDGEEPSDPVEVLKMRSNHDAYAKSWYLQGGDCYEVDWEDAVGITDEVLTFATNIAMHPETWIDFPIDEEEDNDDFEMSDAQKEHAFTIERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKHDAEVLSTPQVAAARSMWMQELQKKTKPESFWCGRDTFELKDSSDVLQDDGSPMGHETHSGSTLPWTFTSEPSMSSMSSNYETEKYQIDTSETQFIDKSVIVEKPIIKNEDKNLTIGSSSKFLVQNYEDESDNDWLEEDSELGGCNGTILPLENEEDISFSDLEDDDMVLPAKFKIASKE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112683278 112687841 - Tan0020042.1 Tan01g4674 742098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4674 432 ProSiteProfiles BSD domain profile. 198 250 IPR005607 -
Tan01g4674 432 MobiDBLite consensus disorder prediction 12 66 - -
Tan01g4674 432 MobiDBLite consensus disorder prediction 47 66 - -
Tan01g4674 432 Pfam BSD domain 197 254 IPR005607 -
Tan01g4674 432 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 420 - -
Tan01g4674 432 SUPERFAMILY BSD domain-like 168 255 IPR035925 -
Tan01g4674 432 MobiDBLite consensus disorder prediction 79 133 - -
Tan01g4674 432 MobiDBLite consensus disorder prediction 81 97 - -
Tan01g4674 432 Gene3D BSD domain 161 260 IPR035925 -
Tan01g4674 432 SMART wurzfinal6 198 250 IPR005607 -
Tan01g4674 432 MobiDBLite consensus disorder prediction 307 323 - -
Tan01g4674 432 SUPERFAMILY Formin homology 2 domain (FH2 domain) 84 292 - -
Tan01g4674 432 MobiDBLite consensus disorder prediction 299 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4674 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4674 Tan-Chr1:112683278 Tan07g2105 Tan-Chr7:72421064 1.10E-08 dispersed
Tan01g4674 Tan-Chr1:112683278 Tan03g1693 Tan-Chr3:72898093 5.10E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g621 . Blo12g00993 . Bda03g00165 . Bpe04g00149 . . . . . Cma09g00302 Car01g01384 . . Cpe06g00212 . . . . . . . . . . . . . . . Cone4ag1626 . . . Lsi04g01466 Csa04g02495 . . . . . . . . . . Sed13g1819 Cmo01g01833 Cmo09g00301 . . . Car09g00254 . . Bhi09g03205 Tan01g4674 Cmetu07g0333 . Hepe01g1843 Mch11g0377 . . . . . . . . . . Chy07g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35