Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4675 ATGCCGATGTACCAGCCTTCTTCCGGTCGGAGAAGAGAGGCCGATTCGGAGCTGGGTTTGGGTTTGGGTGGTGGTGGTGATGGGCAAGTTCTTGATGTAGAAACCGCCGTGAAAGATGGTATTCTCGGTGGCGGTGGGTTAATCTGCGACGGCGGAGGGGCTGAGAAATTGGATCTGAAGGAGATGGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCTGTTTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTACGAGCGATCCAACATCCTCAAATGGTTTTCTCTTGGCCATTTCACATGCCCCACCACAATGCAAGAGCTATGGGATGACTCAATCACCCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTTCGCAGAAGTATTTGGCGATGAAGAAGAGATCTGAGGATGTGCAGGGGAGGGCTCTTGAACTCTTAGACACTTTGAAGAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTTCGGCAAGTTGTCGCCTCGAATTCTTCGGCAAAGAAGACTGTGGAAGACAATGGTGGTCTTGCTTTGATTTCGTCTTTGTTGGGTCCTTTCACATCCCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGGAGAAACCTTGTTCAACCTGCAAAGATTTCGTTAATGGTGGATATGTTGAATGAGGGATCCACTGAGACTAAAATCAACTGCACCAGATTGATTGAAACTTTGCTGGATGGGGACGATTGTGGGGCAGACACTGTCTCGAGTTTAAGTCTCTTGGTTGGATTGTTAAGATTAATCAAAGAGAAAAAACATCCAATCGGTGTTCTTGCTGGATTAAGATTGCTAAAAGCTCTGTGCTGCCAAGAACCAGTGACGAACTCAGTAGTGAGCATTGGAGCAATCCCACAATTGATCGAAATTCTCCCGAATTTGGACCCCGAATGTTTGGAACTAGCCCTTCATGTATTGGACTCGCTCTCGTCCCTCTCAGAGGGGAGGGTGGGCTTGAAAGATTGCCCCAACACCATTCCAAATTTAGTCAAGTTGTTAATGAGAGTCTCGGAGAGCTGTACTCAACTGGCTTTATCAATCTTATGGGCAGTTTGTAAACTTGCTCCTGAAGAATGTGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGCGGTTGCAATCCCGATCTGAAACAACGCTCTGCTGAGCTTCTCAAGCTCTGCAGCTTAAATTACACAGCAACCCTCTTCATATCCAAATGTAAGCTTACAAGGACAATACAATAA 1368 47.3 MPMYQPSSGRRREADSELGLGLGGGGDGQVLDVETAVKDGILGGGGLICDGGGAEKLDLKEMVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRQVVASNSSAKKTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTETKINCTRLIETLLDGDDCGADTVSSLSLLVGLLRLIKEKKHPIGVLAGLRLLKALCCQEPVTNSVVSIGAIPQLIEILPNLDPECLELALHVLDSLSSLSEGRVGLKDCPNTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPDLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112695814 112698393 - Tan0004468.1 Tan01g4675 742099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4675 455 CDD RING-Ubox_PUB 72 122 IPR045210 -
Tan01g4675 455 Pfam U-box domain 71 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g4675 455 SUPERFAMILY RING/U-box 65 141 - -
Tan01g4675 455 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g4675 455 PANTHER WDSAM1 PROTEIN 67 450 IPR045185 GO:0061630(InterPro)
Tan01g4675 455 Gene3D - 154 434 IPR011989 -
Tan01g4675 455 MobiDBLite consensus disorder prediction 1 23 - -
Tan01g4675 455 SUPERFAMILY ARM repeat 241 438 IPR016024 -
Tan01g4675 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 153 IPR013083 -
Tan01g4675 455 SMART Ubox_2 74 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4675 Tan-Chr1:112695814 Tan03g1327 Tan-Chr3:69777159 2.80E-31 dispersed
Tan07g0846 Tan-Chr7:14306527 Tan01g4675 Tan-Chr1:112695814 4.00E-26 transposed
Tan01g4675 Tan-Chr1:112695814 Tan02g1715 Tan-Chr2:80165672 1.20E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4675 - - - 0.0