Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4701 ATGTTGAGCTTGGTCCTTGGAAAAGATCAATCATTTAGAAACTGGATGTTTACACAATATAAGAGGCTCTGTGATCTGCCATCCTTTAGAGCTTTAGAAGATGTAAGATCTGCTCTGGAAGGAATTTTTGAATCATTTTCTGAGTTAATGAACAATGAAGAGAGTCAAGTGAATATTGATGAGGAAATTTCTGATTCCTTGAAGCATTCTACTCGTAATAGGTGTGAAATTTCCATGGAACTATCTGATAAAAAGAGAAAATTGAGACATTGTGATTCCCTTGAAGATGGTGTCAATGACAAAGTGTCTGGTCCACATCGTTCATCAATTCCTCTTGATGACAAGCACACCATGTATTCTGATTTTGATACTGGTGGCTTGAGAGCCTTCGAAGTCCGGGAGCCTGGAGGTTTGCTACATGGCAGTTTGCCCCAGTCGCAGGATCCTTTGAGCAAGCACGATCATTTGTCTTATGCAAAAACATCATTAGACCTGCAAAGCAATTCTTTTGAATGTACAAAGCATTCAATTGATGGAAATCAAGTTTCAAGTGTTGATCGCAACTTTCCTGCTCAGAGATTGTCTACTGGAGATATCAATAATGATCCTGTGCCTCCGAGACATCAACTATCAGTGCCATGTAGTTCTACAACTTCTCAGAGTTTGTGGTTTTCTGATGGAGATCCATCAGCCATGGATATCTTCTCTGCTTCTAAACAGTTATGGGTGGGTCTTTTAGCCCCTGATGCATCTGAAGCACACATAAGGTATCAATTTGAAAGGTTTGGTTACATCGAACATTTTTTCTTCTTTCCGTTAAAAAGGTTTGCAGTAGTGGAGTATGGTCACATCATTGATGCCATAAGGGCACGTGAATATATGCGTGGACAATTTCAATGGTGTGTAAAATTCATGGATATTGGTTTAGGGACTAGGGGTTCCACCCACGGGGTTGCAATTGGTTCCAGTTTGCATGTTTATGTTGGAAACGTTTTGAGCCACTGGGTGAAGGATGAGATTTTGCATGAGACCAGGAAAGTGCTTAGCAAGGGTCCATACGTGGTCTCTGATCTTAGCAGTGAGGGAGCATTGCTGATGGAATTTGAGACTCCCGAAGAAGCTGCAGTTGTAATGACACATCTCAGACAACATCGAAGGGAAAAGAATATTCACCGGCCACCTTCAAATGCTGGACAAACTAACATCGCTGTGCCTTATTTAGATAGCGGAAGATCTTCTTGTGCCCCAACTGGTGGTAGCATCAGAAGTAACAATCCTGCGAACTTGCCCAATAGTATGGTTGGGTCACCTCATGCTCCAATTGTCCCAGAGAGTCCTAACTTCAGGACAAGAATGTCAGAGCTATCTTCCTTGCTCTACACCCTACGTGCAAAATACAACATCAATCAAAACTTGAGTTATTTTGAAAGCTACATGTCTGGAAGTTGCAACACTTCCATGAGGGAAGAAGACAGAACTCCTACTAGCACTCTCTGGGTTTCTTTTCCAAATTTTACTTCTCCTTTTGTCACCGATGAGGAGTTGATGAAGATCTGTAATCTTGCCATCACCAATACTGGCTCTATTGTCAGGATGACTCGAGCAAGTGTACAGGTGGGCGGTGGTTGGTTTGTTGAGTGCAGTAGTGTAGATGCCGCAATCACTGTCTTGAAGAACCTCCGTGGTTGTCCTGGAATTTTCCTTCGAATAGAATTCAGTAAACCAGGAAGGTTTCATACAACACCTTTTCTGAGGAACCACGATAGTTGTTCTATGGAGCATCCATCTCCTAGAGTATTACATGAGAATCGTGCAATACCTCAGCAAGGTGGATATTCATATCAGTCAAACTGGGCTCCTTCTGGTCATACAGAGATGCCTGAAATAGGGGTCAGAAAGTCTGATGCTTATGAAAAAAACCTGCTGATAGATCATCCTCAAGGTGGCCACATAGTGTCTGGAAGTATTCCATGCTTGCCCATATCAACAATGGGGCCTCCCGCTCCACCACCTCCACCGCAGATTCAGCCACCTCCATTTGTTCAATCTCCATACCCTCCTCCAAATAGTTCTTGGGATGCAAGGGGTTTAAACCATCCTTTGCCTTTAAATCCAATATCACCAAGTGTTATGCCTAATACTTTTCCGGGCAATTCTGTTGCATGCCCTCCTTTTTTACCTGCTTCTGTGACACCTCTTGCTCAGATACAAGGAACTCCAATGCAGCAACATCTAGACCATGTTTTTCCCCATCCTGTTGCTCCTCCATCAATGTCATCTCTACCACCTCCCCAGCCCGAGATGCCTCCTCCCATGCCTCCATCTCCACCACCTTTGCCTCACTCACAACCACCTAATATTCCTCCTCCACCCAGTTCTCCTCCACCTCCACCACCCCTAGCTGCCACAGAAATCAGTGAAGTGGAAAGTTGTAGCCAGCCTGTCCAGTATCAGTGGCAAGGAGCATTGTGTAAAAGCGGGGTTCAGTACTGTACAATTTTTTCAAAAAGAGTGGATTCACATACTTGCAAATACTTGAATGCTAGTCCAGAGCCTATCGAGTGGCCAGCAAAATTAGATATGACCAAACGCACAGATTTTAGGCATGTGAAGTCGACATTCACTAGCACTTCACCAAATAAAAGGGAGATATGTCAGCTTATCCCATCTTCTGGTGGAGACCATAAAGGATTTCAAGATTTTGTATCATATTTGAAGCAGAGGGATTGTGCAGGAGTAATAAAGATACCGGCCACTAAATCGCTATGGACTAGGCTTCTCTTTATACTTCCATATTCACAGGACTCGTGTTCTCTGCTCTCAATTCCGCCAGGTCCACCAGATAGCCTGATTGCCTTGGTTCTTCCCAAAGAAACAAATTTCGAATGGGTTTGA 2895 43.52 MLSLVLGKDQSFRNWMFTQYKRLCDLPSFRALEDVRSALEGIFESFSELMNNEESQVNIDEEISDSLKHSTRNRCEISMELSDKKRKLRHCDSLEDGVNDKVSGPHRSSIPLDDKHTMYSDFDTGGLRAFEVREPGGLLHGSLPQSQDPLSKHDHLSYAKTSLDLQSNSFECTKHSIDGNQVSSVDRNFPAQRLSTGDINNDPVPPRHQLSVPCSSTTSQSLWFSDGDPSAMDIFSASKQLWVGLLAPDASEAHIRYQFERFGYIEHFFFFPLKRFAVVEYGHIIDAIRAREYMRGQFQWCVKFMDIGLGTRGSTHGVAIGSSLHVYVGNVLSHWVKDEILHETRKVLSKGPYVVSDLSSEGALLMEFETPEEAAVVMTHLRQHRREKNIHRPPSNAGQTNIAVPYLDSGRSSCAPTGGSIRSNNPANLPNSMVGSPHAPIVPESPNFRTRMSELSSLLYTLRAKYNINQNLSYFESYMSGSCNTSMREEDRTPTSTLWVSFPNFTSPFVTDEELMKICNLAITNTGSIVRMTRASVQVGGGWFVECSSVDAAITVLKNLRGCPGIFLRIEFSKPGRFHTTPFLRNHDSCSMEHPSPRVLHENRAIPQQGGYSYQSNWAPSGHTEMPEIGVRKSDAYEKNLLIDHPQGGHIVSGSIPCLPISTMGPPAPPPPPQIQPPPFVQSPYPPPNSSWDARGLNHPLPLNPISPSVMPNTFPGNSVACPPFLPASVTPLAQIQGTPMQQHLDHVFPHPVAPPSMSSLPPPQPEMPPPMPPSPPPLPHSQPPNIPPPPSSPPPPPPLAATEISEVESCSQPVQYQWQGALCKSGVQYCTIFSKRVDSHTCKYLNASPEPIEWPAKLDMTKRTDFRHVKSTFTSTSPNKREICQLIPSSGGDHKGFQDFVSYLKQRDCAGVIKIPATKSLWTRLLFILPYSQDSCSLLSIPPGPPDSLIALVLPKETNFEWV 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112920703 112928823 - Tan0017013.2 Tan01g4701 742125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4701 964 CDD SPOC_FPA-like 818 956 - -
Tan01g4701 964 Pfam RNA recognition motif 241 297 IPR000504 GO:0003723(InterPro)
Tan01g4701 964 Pfam SPOC domain 814 955 IPR012921 -
Tan01g4701 964 MobiDBLite consensus disorder prediction 413 432 - -
Tan01g4701 964 Gene3D - 230 313 IPR012677 -
Tan01g4701 964 CDD RRM_SF 241 298 - -
Tan01g4701 964 MobiDBLite consensus disorder prediction 413 442 - -
Tan01g4701 964 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 3 921 IPR052586 GO:0043130(PANTHER)
Tan01g4701 964 MobiDBLite consensus disorder prediction 755 802 - -
Tan01g4701 964 MobiDBLite consensus disorder prediction 746 807 - -
Tan01g4701 964 SUPERFAMILY RNA-binding domain, RBD 225 298 IPR035979 GO:0003676(InterPro)
Tan01g4701 964 MobiDBLite consensus disorder prediction 665 686 - -
Tan01g4701 964 MobiDBLite consensus disorder prediction 665 689 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4701 K18667 - - csv:101209442 1625.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4701 Tan-Chr1:112920703 Tan01g4703 Tan-Chr1:112920703 0.00E+00 dispersed
Tan01g4700 Tan-Chr1:112920703 Tan01g4701 Tan-Chr1:112920703 0.00E+00 tandem
Tan01g4701 Tan-Chr1:112920703 Tan01g4702 Tan-Chr1:112920703 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59