Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4705 ATGGATTCTTTTGGAGGTTTGAGTATTGAAGGGGAATGGGATTTGTGCAGCTCAATTTTATCATTGGAAGAGCTTGATTTTACGGCAATTCCTCAGGCCACGGCGGGGATTGCCGATGCTTGGTTTTGTTCTTTGGATTCCTTCACTGCCAATTTGAATTCCTGTGTTTTTGGAGCTAATTCCAGTGATCAATTTCCAGCTTGTATTGCTGCTGCTGATTATAATAATCATATCTCCATGTCTGGTGGTGCAATTGAAGAGAAGAAAATGGAGTCCATTTTCTCAGCTTCTTGTGACATTTTGCTGCAAGAGATTACTGGTTTTTGTGGTGAAGATAAATTTTTAAATATGGATAATGTTGAAATAATCCACCAAGTGGATAATGCTGGCAGTGGCAATCCTGCAAATGCATTGCACCACAAAAGGAAATCCATTGTGGTCGCTGATGAGGATGAAGATGTTGATCAGAACAAGCTCAACAACCCCAATAAGAAAATTCGTACTTCAAACAATAAAACAAGGAAGGCAACACAGTCAAATGGTAAGAGCAACCAGAAATTAAGCACTCGCCGGCGCAAATGTGAAGAAGAGCAGGAAAATGGAGTTGGGTCTGATATGAACAGTTGCAGCAGCGATAACTCATCAGAGGATGACAGTAATGCTTCACAAGATGCTAATGGTGGCACAGTTTTAGAGGGCGATGCCTCCCCTGCAAAAGCCAAGACAAGAGCCACTAGAGGCTCAGCAACTGATCCACAGAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTCAGAATTCTGCAGAAACTTGTCCCTAATGGAACTAAGGTTGACATTAGCACAATGCTTGAAGAAGCAGTTCATTACGTGAAGTTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGCTGTGGATGTATGCTCCAATTGCTTACAATGGAATGGATATTGGCCTGCAGCAGAAACTTTCTTCATTTTTATGA 999 41.94 MDSFGGLSIEGEWDLCSSILSLEELDFTAIPQATAGIADAWFCSLDSFTANLNSCVFGANSSDQFPACIAAADYNNHISMSGGAIEEKKMESIFSASCDILLQEITGFCGEDKFLNMDNVEIIHQVDNAGSGNPANALHHKRKSIVVADEDEDVDQNKLNNPNKKIRTSNNKTRKATQSNGKSNQKLSTRRRKCEEEQENGVGSDMNSCSSDNSSEDDSNASQDANGGTVLEGDASPAKAKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112934162 112936204 - Tan0009234.1 Tan01g4705 742129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4705 332 Pfam Helix-loop-helix DNA-binding domain 258 298 IPR011598 GO:0046983(InterPro)
Tan01g4705 332 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 89 308 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4705 332 MobiDBLite consensus disorder prediction 161 185 - -
Tan01g4705 332 MobiDBLite consensus disorder prediction 149 253 - -
Tan01g4705 332 MobiDBLite consensus disorder prediction 201 229 - -
Tan01g4705 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 248 297 IPR011598 GO:0046983(InterPro)
Tan01g4705 332 CDD bHLH_AtIND_like 249 311 - -
Tan01g4705 332 SMART finulus 254 303 IPR011598 GO:0046983(InterPro)
Tan01g4705 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 314 IPR036638 GO:0046983(InterPro)
Tan01g4705 332 Gene3D - 250 306 IPR036638 GO:0046983(InterPro)
Tan01g4705 332 FunFam Basic helix-loop-helix transcription factor 249 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4705 Tan-Chr1:112934162 Tan02g1022 Tan-Chr2:14677850 1.90E-37 dispersed
Tan01g0640 Tan-Chr1:6143738 Tan01g4705 Tan-Chr1:112934162 1.20E-37 wgd
Tan01g4705 Tan-Chr1:112934162 Tan02g1741 Tan-Chr2:81174060 4.80E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26586 PF00010 HLH 9.90E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4705 - - - 0.0