Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4707 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAGGGCTGCAGCGAAGGTTGCGTTTTAAGGTCAAGTCTTCACTGGATTGACTCACCCGAAGCCCAAGCCAACGCCACCTTATTTCTCGCTAAATTCTTCGGCCGCAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCCCATCATCAAAGACCCGCTCTGTTTCAGTCTCTCTTATTCGAAGCTTGCGGGCGCACGGTGAACCCGGTCAGCGGGGCCGTTGGCCTTTTGTCGAGCGGGAACTGGCACGTCTGTCAGGCGGCCGCCGACACGGTTCTCAACGGGGGAGTTCTCCGGGCGATACCCGGAATCGAACTTTCTGGGAATCCCACGGCCAACGTCGAGGAATCCTCTCTCAGTTTCAATACGGATGTTTGGACCAACACCACGCAGAATCTTCAATTTTACCCTTCCATTCCGTCCGATTTCCGGCGATTCTCCGATCTCGGCCTCGCCATCGCCAGGGGAAAGAACCATCCGGTGGAGAATCGGCGCTCTCTCGATTCAGAGGAGTCGGTGATGACCAGCTTCGGAAGTGGCGATAACGGCGGCGGCGACCGGCGGAAAGAGAGGAAGCTGTTAAACTTATTCATCTGA 624 55.77 MSCNGCRVLRKGCSEGCVLRSSLHWIDSPEAQANATLFLAKFFGRSDLLSFISAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTVLNGGVLRAIPGIELSGNPTANVEESSLSFNTDVWTNTTQNLQFYPSIPSDFRRFSDLGLAIARGKNHPVENRRSLDSEESVMTSFGSGDNGGGDRRKERKLLNLFI 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112959317 112960629 + Tan0008333.1 Tan01g4707 742131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4707 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 136 - GO:0010468(PANTHER)
Tan01g4707 207 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Tan01g4707 207 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Tan01g4707 207 MobiDBLite consensus disorder prediction 171 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4707 Tan-Chr1:112959317 Tan04g2009 Tan-Chr4:71656633 2.40E-38 dispersed
Tan01g4707 Tan-Chr1:112959317 Tan03g1649 Tan-Chr3:72595636 1.90E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26588 PF03195 LOB 1.70E-24 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4707 - - - 0.0