Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4713 ATGGGCGGAGGCAATGGCCAAAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAACAGAAGTCCTCAAGAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACAATACAGTGCAAGGTATGCATGCAGACATTTATATGTACAACGACAGAAGTGAAGTGCAGGGAACATGCAGAAGCTAGGCACCCAAAATCTGATGTATATGCCTGTTTTTCCCATCTTAAGAAATGA 234 43.59 MGGGNGQKSKMAREKNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAEARHPKSDVYACFSHLKK 77
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113021279 113022993 - Tan0002494.1 Tan01g4713 742137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4713 77 MobiDBLite consensus disorder prediction 11 26 - -
Tan01g4713 77 Pfam Zinc-binding 38 75 IPR039438 -
Tan01g4713 77 Pfam Small EDRK-rich factor 1/2-like, N-terminal 3 35 IPR007513 -
Tan01g4713 77 Gene3D - 1 77 IPR026939 -
Tan01g4713 77 SUPERFAMILY Expressed protein At2g23090/F21P24.15 1 76 - -
Tan01g4713 77 MobiDBLite consensus disorder prediction 1 30 - -
Tan01g4713 77 PANTHER OS07G0114300 PROTEIN 1 77 IPR039713 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4713 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0651 Tan-Chr1:6202442 Tan01g4713 Tan-Chr1:113021279 2.80E-32 wgd
Tan01g4713 Tan-Chr1:113021279 Tan03g1640 Tan-Chr3:72507161 2.10E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g669 . . . . . . . . . . . Cma09g00277 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g02464 . . Blo17g00866 Blo18g00715 . Bda01g01593 Bpe02g01780 Bpe05g00039 Bma01g00674 Bma05g00051 Sed13g1796 . Cmo09g00272 . . . Car09g00233 . . Bhi09g03246 Tan01g4713 Cmetu07g1941 . . Mch11g0349 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001418 2 3 2 2 2 2 1 3 2 1 2 2 2 3 3 4 2 2 2 1 3 2 2 1 3 2 3 3 3 2 67