Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4722 ATGTCGTCGATTGTTCCCGACGGAGATAACAGCAGTCGTGGAATCCGGCGAACCCTCGGCGTTGCCGGTTGCCTTTTCCAGCCCTTTTCAGATCCGAAGTCGACTGAAAGTATGGCGGATAAGGAGAATATATTCCGAGTCACTCGTGGTTCTAAGAAGAGGGCCGCCGAGGCTGCTACCCCCGACGACCGCTCGGCTAACAAGAGGAGAGTCGTTCTCGGAGAGCTTCCTATTTTACAGAATGCTAGTTCTTCCGTCGATCGCAAATCCAAGTCCAGAGCCAGCAGGCAGAGACGGAGACTAAAATCGAGGGATTCAGCGGGGACAAGTGCTGCCGCTGAAATCAATACACTTCCGGAAGCTGACTTCAAGTTATCAGATGAGGGGAATTCCGAAGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGACTATCTTCGCGCTATGGAGACTGATCCTAGAAGAAGACCTTTACCAGATTACATCGGGAGGGTACAAACGGATATAAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTTGTTTCAGACACCGTTTTCCTATGTATTTCATATGTTGACAGATACTTGTCTCTAAATGCCATCAGCAGGCAAAAACTTCAATTGCTGGGGGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCGCACGTTGAAGAATTTGTTTATATCACAGACAATACTTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGATATATTGAAGTCACTGGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGAGATTCACCATGATTGCTCAAGAGACTTATGAATTCAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTTGTTGCTGCATCTGTTATATTTCTAGCGCGATTTATGATCCAACCGAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACATAAGTACAAATTTGTGTCTGTCATGCCTTCACCTCCGGAGATTCCTATTCCATATTTTGAAGATGTTAGATTATGA 1233 43.96 MSSIVPDGDNSSRGIRRTLGVAGCLFQPFSDPKSTESMADKENIFRVTRGSKKRAAEAATPDDRSANKRRVVLGELPILQNASSSVDRKSKSRASRQRRRLKSRDSAGTSAAAEINTLPEADFKLSDEGNSEDPQMCRVYASDIYDYLRAMETDPRRRPLPDYIGRVQTDISANMRGILVDWLVEVAEEYKLVSDTVFLCISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEADILKSLEFELGNPTIKTFLRRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKYKFVSVMPSPPEIPIPYFEDVRL 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113082550 113086405 + Tan0021713.1 Tan01g4722 742146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4722 410 Pfam Cyclin, N-terminal domain 143 271 IPR006671 -
Tan01g4722 410 SMART Cyclin_C_2 274 397 IPR004367 -
Tan01g4722 410 Gene3D - 143 393 - -
Tan01g4722 410 SUPERFAMILY Cyclin-like 274 399 IPR036915 -
Tan01g4722 410 ProSitePatterns Cyclins signature. 176 207 IPR048258 -
Tan01g4722 410 CDD CYCLIN_AtCycA-like_rpt2 274 388 - -
Tan01g4722 410 PIRSF Cyclin_A_B_D_E 26 401 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan01g4722 410 SUPERFAMILY Cyclin-like 132 271 IPR036915 -
Tan01g4722 410 Gene3D - 157 272 - -
Tan01g4722 410 Pfam Cyclin, C-terminal domain 274 396 IPR004367 -
Tan01g4722 410 FunFam Mitotic cyclin 6 159 259 - -
Tan01g4722 410 MobiDBLite consensus disorder prediction 35 70 - -
Tan01g4722 410 MobiDBLite consensus disorder prediction 27 111 - -
Tan01g4722 410 FunFam Cyclin A1 261 393 - -
Tan01g4722 410 SMART cyclin_7 278 366 IPR013763 -
Tan01g4722 410 SMART cyclin_7 181 265 IPR013763 -
Tan01g4722 410 PANTHER CYCLINS 123 385 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3680 Tan-Chr1:101634757 Tan01g4722 Tan-Chr1:113082550 3.90E-76 dispersed
Tan01g4722 Tan-Chr1:113082550 Tan02g1772 Tan-Chr2:82199619 9.60E-124 dispersed
Tan02g0995 Tan-Chr2:13927453 Tan01g4722 Tan-Chr1:113082550 1.00E-86 transposed
Tan01g4722 Tan-Chr1:113082550 Tan02g1771 Tan-Chr2:82199619 3.30E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4722 K06627 - csv:101207493 664.07