Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4741 ATGGGGACCTACCGATCCTCGCCGATTATGGCTCTCCTCTTCTTCTTCGTCATGATAACTTTATCATCGGCGTTGGCCTCTTCGATCATCCCCGAGAGGACGGACGAGGAGGTGATGGCGCTCTATGACGAGTGGCGTGCCAAGCACGGGAAGTTGCACAACGGCTTGAGAGGACTGAGGGATAATCGATTCGAGATCTTCAAGGACAATCTCAAATTCATCGACGAAATCAACGCCCAAAATTTGCCCTACCGATTAGGTTTGAACGTCTTCGCAGATCTGACGAACGCCGAGTACCGATCCAAGTACTTGGGAACCAAATTCGCCGCCGGTTCAAGGCGGAACAAGACGAGCAGCCGCTATCAGCCTCGCCTTGGGGATGCACTGCCCGACTCTATCGATTGGAGGGAGAAAGGAGCCGTCGCTCCCGTTAAAGACCAGGGAAGTTGTGGGAGTTGCTGGGCGTTTTCAACTATAGCTGCTGTGGAAGGCATAAACCAGATTGTTACAGGCGACTTGATACCTCTATCCGAACAGGAGCTGGTGGATTGTGACACTTCTTATAACGAAGGTTGCAATGGAGGCTTAATGGACTATGCCTTTGAATTCATCATCAACAATGGTGGCATTGACACTGAGGAAGATTATCCTTACAACGGCTTTGATAGCTCCTGCATCCAATATAAGAAAAATGCTAGGGTCGTTTCAATTGATAGTTATGAAGACGTCCCTGTAAACAATGAGAAAGCACTGCAAAAAGCAGCAGCTAAACAGGTTGTGGCTGTTGCCATTGAAGGAGGTGGTAGAAGTTTCCAGCTATATCAATCGGGTATATTCACTGGAAGGTGTGGAACAGATTTGGACCATGGTGTTAATGTAGTTGGATATGGGACTGAAGGGGGCGTTGATTACTGGATTGTGAGAAACTCATGGGGTGCGAACTGGGGTGAACATGGCTACATCAGGATGCAACGTAACATCGCTTCACCCAATGGTCTTTGTGGGATTGCAATGGAGCCTTCCTACCCCATTAAAAACGGACCAAACCCACCGAATCCAGGCCCAACTCCTCCAAGTCCGGTGAAACCCCCATCTGTATGTGATGAATACTACACTTGTCCTGCCGCTGAAACTTGCTGCTGCATCTTCGAGTTCTCAAAATTGTGCCTTGAATGGGGATGCTGCCCACTTGAAAGCGCCACTTGCTGTGACGACCATTACAGCTGTTGCCCCCATGACTACCCCATCTGTAACGTCCGTGCTGGAACCTGCTTGAAGGGCAAGAATGATGTTTTCGGAGTGAAGGCGATGAGGCGCACTGCAGCTGCGGCCAAACCATCGTGGGCATTTGGAGATGTGACTATTGGAAAGAGCAGTGCTTAG 1383 49.6 MGTYRSSPIMALLFFFVMITLSSALASSIIPERTDEEVMALYDEWRAKHGKLHNGLRGLRDNRFEIFKDNLKFIDEINAQNLPYRLGLNVFADLTNAEYRSKYLGTKFAAGSRRNKTSSRYQPRLGDALPDSIDWREKGAVAPVKDQGSCGSCWAFSTIAAVEGINQIVTGDLIPLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYNGFDSSCIQYKKNARVVSIDSYEDVPVNNEKALQKAAAKQVVAVAIEGGGRSFQLYQSGIFTGRCGTDLDHGVNVVGYGTEGGVDYWIVRNSWGANWGEHGYIRMQRNIASPNGLCGIAMEPSYPIKNGPNPPNPGPTPPSPVKPPSVCDEYYTCPAAETCCCIFEFSKLCLEWGCCPLESATCCDDHYSCCPHDYPICNVRAGTCLKGKNDVFGVKAMRRTAAAAKPSWAFGDVTIGKSSA 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113237461 113242061 - Tan0021612.1 Tan01g4741 742165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4741 460 PRINTS Papain cysteine protease (C1) family signature 147 162 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan01g4741 460 PRINTS Papain cysteine protease (C1) family signature 289 299 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan01g4741 460 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan01g4741 460 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 147 158 IPR000169 -
Tan01g4741 460 SMART Inhibitor_I29_2 42 99 IPR013201 -
Tan01g4741 460 SMART GRAN_2 367 424 IPR000118 -
Tan01g4741 460 SMART pept_c1 129 344 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan01g4741 460 FunFam Cysteine protease 1 364 427 - -
Tan01g4741 460 CDD Peptidase_C1A 130 343 IPR039417 -
Tan01g4741 460 Gene3D Granulin 364 427 IPR037277 -
Tan01g4741 460 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 287 297 IPR025660 -
Tan01g4741 460 FunFam Cysteine protease 1 23 346 - -
Tan01g4741 460 Gene3D Cysteine proteinases 22 346 - -
Tan01g4741 460 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 35 341 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Tan01g4741 460 Pfam Granulin 378 425 IPR000118 -
Tan01g4741 460 SUPERFAMILY Cysteine proteinases 34 344 IPR038765 -
Tan01g4741 460 Pfam Cathepsin propeptide inhibitor domain (I29) 42 99 IPR013201 -
Tan01g4741 460 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Tan01g4741 460 SUPERFAMILY Granulin repeat 364 398 - -
Tan01g4741 460 Pfam Papain family cysteine protease 129 344 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4741 K25900 - - csv:101217590 803.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4741 Tan-Chr1:113237461 Tan02g0940 Tan-Chr2:11600110 3.10E-139 dispersed
Tan01g4741 Tan-Chr1:113237461 Tan03g1572 Tan-Chr3:71990241 1.40E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33