Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4742 ATGCTCCTTCTCAAGAATAATATGGCTGTCGAGCTTATGGTAGGCTTTGGGGATGCTGCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCGAGAATTTCCTCAGATTGATGTCTCATACCCCCAATCAACCTCACTCCCACGACGATTCTTCCACTTCCACTGCTCCCAATGCTACCGCTGGATACGAAGCCGTCGCCGATTCTGTCGTCAGCAAATTCAAAAAGGTCATTTCTTTACTCGACCGGAACCGAACCGGTCATGCCCGTTTCAGAAGGGCTCCGGTTGTTTCTACTACTTCCTCTTCGCCGCCGCCTCCTCCGCCCAAGGTTAAGCCGCAGAATCAAGATCCGAGTTCGTCGTCTCGGATTTCAGTCCCGCAGATTCAAGTAAAGAAGCAAGAATCAACCTCTGCTTTTAAGGTTTATTGCCCCACGCCTTCCTCTGTTGTGCGTTTGCCTCCTCTTCCTCACAGTAACCCCCATCAGCCTTCTAATCCACCAAATACTTTCCAAGCCCAGCAAAATACTTCGTCGGTGGGGCTCAAAAATGGGTCTGTAGATAGAAAAGATTCAACTACCACCATCAATTTCGCAGCCTCGCCGCCGATATCCGCGGCAAATTCGTATATTTCATCGTTAACCGGAGACACCGAAAGCTTACAGCCATCTTTGTCATCTGGGTTTCAGTTCACCCACATGTCCCAGGTTTCTTCGGCCGGAAAGCCCCCTCTTTCATCCTCCTCACTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCATGAAGTGCGGTTCGTCTTCCGGCCGGTGTCACTGTTCGAAGAAGAGCAGGAAAAACAGGATAAAGAGAGTGATCAGAGTTGCGGCCGTTAGTTCGAAACTTGCGGATATTCCACCGGACGATTACTCATGGAGAAAGTACGGGCAAAAACCCATTAAAGGGTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCTCTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA 1167 49.27 MLLLKNNMAVELMVGFGDAATNFTPKMEENAAVSAVQEAASAGIQSVENFLRLMSHTPNQPHSHDDSSTSTAPNATAGYEAVADSVVSKFKKVISLLDRNRTGHARFRRAPVVSTTSSSPPPPPPKVKPQNQDPSSSSRISVPQIQVKKQESTSAFKVYCPTPSSVVRLPPLPHSNPHQPSNPPNTFQAQQNTSSVGLKNGSVDRKDSTTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMDDSAMKCGSSSGRCHCSKKSRKNRIKRVIRVAAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHALSTETPAALVLESS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113264247 113266707 + Tan0011955.1 Tan01g4742 742166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4742 388 FunFam WRKY transcription factor 65 299 376 - -
Tan01g4742 388 MobiDBLite consensus disorder prediction 116 130 - -
Tan01g4742 388 ProSiteProfiles WRKY domain profile. 310 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g4742 388 MobiDBLite consensus disorder prediction 55 74 - -
Tan01g4742 388 MobiDBLite consensus disorder prediction 167 204 - -
Tan01g4742 388 MobiDBLite consensus disorder prediction 105 148 - -
Tan01g4742 388 MobiDBLite consensus disorder prediction 131 148 - -
Tan01g4742 388 Pfam Plant zinc cluster domain 267 313 IPR018872 -
Tan01g4742 388 SMART WRKY_cls 315 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g4742 388 MobiDBLite consensus disorder prediction 181 204 - -
Tan01g4742 388 Gene3D WRKY domain 300 376 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g4742 388 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 33 376 IPR044810 GO:0003700(InterPro)
Tan01g4742 388 Pfam WRKY DNA -binding domain 317 373 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g4742 388 SUPERFAMILY WRKY DNA-binding domain 313 375 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4742 Tan-Chr1:113264247 Tan03g1585 Tan-Chr3:72085689 3.40E-78 dispersed
Tan01g4742 Tan-Chr1:113264247 Tan01g4743 Tan-Chr1:113264247 8.70E-151 tandem
Tan01g3739 Tan-Chr1:102159890 Tan01g4742 Tan-Chr1:113264247 1.30E-60 transposed
Tan01g4742 Tan-Chr1:113264247 Tan03g1570 Tan-Chr3:71954948 5.10E-34 wgd
Tan01g4742 Tan-Chr1:113264247 Tan05g1563 Tan-Chr5:34512686 2.00E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26590 PF03106 WRKY 4.00E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4742 - - - 0.0