Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4743 ATGCTCCTTCTCAAGAATAATATGGCTGTCGAGCTTATGGTAGGCTTTGGGGATGCTGCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCGAGAATTTCCTCAGATTGATGTCTCATACCCCCAATCAACCTCACTCCCACGACGATTCTTCCACTTCCACTGCTCCCAATGCTACCGCTGGATACGAAGCCGTCGCCGATTCTGTCGTCAGCAAATTCAAAAAGGTCATTTCTTTACTCGACCGGAACCGAACCGGTCATGCCCGTTTCAGAAGGGCTCCGGTTGTTTCTACTACTTCCTCTTCGCCGCCGCCTCCTCCGCCCAAGGTTAAGCCGCAGAATCAAGATCCGAGTTCGTCGTCTCGGATTTCAGTCCCGCAGATTCAAGTAAAGAAGCAAGAATCAACCTCTGCTTTTAAGGTTTATTGCCCCACGCCTTCCTCTGTTGTGCGTTTGCCTCCTCTTCCTCACAGTAACCCCCATCAGCCTTCTAATCCACCAAATACTTTCCAAGCCCAGCAAAATACTTCGTCGGTGGGGCTCAAAAATGGGTCTGTAGATAGAAAAGATTCAACTACCACCATCAATTTCGCAGCCTCGCCGCCGATATCCGCGGCAAATTCGTATATTTCATCGTTAACCGGAGACACCGAAAGCTTACAGCCATCTTTGTCATCTGGGTTTCAGTTCACCCACATGTCCCAGGTTTCTTCGGCCGGAAAGCCCCCTCTTTCATCCTCCTCACTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCATGAAGTGCGGTTCGTCTTCCGGCCGGTGTCACTGTTCGAAGAAGAGGTTGGTCCTTGCAACAGATTATAAAGAATCCCCAGAAATTTTACAAAATTGGGTTTGGAACATATTAGATTGGTTATTGAACTATGAATATTTGAATGGTTTAGCAGGAAAAACAGGATAA 999 47.75 MLLLKNNMAVELMVGFGDAATNFTPKMEENAAVSAVQEAASAGIQSVENFLRLMSHTPNQPHSHDDSSTSTAPNATAGYEAVADSVVSKFKKVISLLDRNRTGHARFRRAPVVSTTSSSPPPPPPKVKPQNQDPSSSSRISVPQIQVKKQESTSAFKVYCPTPSSVVRLPPLPHSNPHQPSNPPNTFQAQQNTSSVGLKNGSVDRKDSTTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMDDSAMKCGSSSGRCHCSKKRLVLATDYKESPEILQNWVWNILDWLLNYEYLNGLAGKTG 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113264247 113266707 + Tan0011955.2 Tan01g4743 742167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4743 332 MobiDBLite consensus disorder prediction 105 148 - -
Tan01g4743 332 MobiDBLite consensus disorder prediction 116 130 - -
Tan01g4743 332 MobiDBLite consensus disorder prediction 131 148 - -
Tan01g4743 332 MobiDBLite consensus disorder prediction 167 204 - -
Tan01g4743 332 MobiDBLite consensus disorder prediction 55 74 - -
Tan01g4743 332 MobiDBLite consensus disorder prediction 181 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4743 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4743 Tan-Chr1:113264247 Tan03g1585 Tan-Chr3:72085689 4.80E-33 dispersed
Tan01g4742 Tan-Chr1:113264247 Tan01g4743 Tan-Chr1:113264247 8.70E-151 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g727 . Blo12g00965 . . Bpe02g00439 Bpe04g00173 Bma04g00155 Bma01g02264 . . Cma01g01820 Cma09g00254 Car01g01421 . . Cpe06g00175 . . . . . . . . . . . . . . . Cone4ag1594 Cone7ag1354 . . Lsi04g01528 . . . . . . . . . . . . Cmo01g01876 Cmo09g00247 . . . Car09g00212 . Cpe02g00194 Bhi09g03292 Tan01g4743 . . . . . Cla05g02069 Cam05g2221 Cec05g2240 Cco05g2281 Clacu05g2214 Cmu05g2081 Cre05g2205 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004656 1 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41