Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4750 ATGGAAGGAGAAGTTTGCTCGGCTGTTAGTTCTTCGCCAACTGGTTCAGAGAAGAGGAAGCAAAGGCATCAGAATCATCTTCAACAAGAAAAACCCTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCGGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCTTACACAACTCCGGTCGCCGCCGCCAGAGCTTACGACACCGCCGTGTTCTACCTCCGTGGCCCAACCGCCCGGCTAAATTTTCCGGAATTGATGTTCGAAGAGGACCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAAAGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAGACCTCGCTCCACGCCTCTAACTCAAACTCTCAAATTTCTGAGAAGCCCGATTTAAACGAGTACCCCAACCCCGAAAGCTCAGACGATGATTAA 456 52.19 MEGEVCSAVSSSPTGSEKRKQRHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEEDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSQISEKPDLNEYPNPESSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113328167 113330080 + Tan0020269.1 Tan01g4750 742174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4750 151 CDD AP2 33 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4750 151 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4750 151 MobiDBLite consensus disorder prediction 122 151 - -
Tan01g4750 151 SMART rav1_2 32 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4750 151 MobiDBLite consensus disorder prediction 122 138 - -
Tan01g4750 151 MobiDBLite consensus disorder prediction 1 32 - -
Tan01g4750 151 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4750 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 16 150 - -
Tan01g4750 151 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677(InterPro)
Tan01g4750 151 MobiDBLite consensus disorder prediction 16 32 - -
Tan01g4750 151 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Tan01g4750 151 Pfam AP2 domain 33 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4750 151 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4750 151 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4750 Tan-Chr1:113328167 Tan05g1640 Tan-Chr5:42919343 1.90E-37 dispersed
Tan01g3504 Tan-Chr1:100198083 Tan01g4750 Tan-Chr1:113328167 1.80E-19 transposed
Tan01g4750 Tan-Chr1:113328167 Tan02g1788 Tan-Chr2:83138908 5.40E-48 wgd
Tan01g4750 Tan-Chr1:113328167 Tan03g1563 Tan-Chr3:71896518 1.60E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26592 PF00847 AP2 2.20E-11 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4750 K09286 - csv:101219005 271.937