Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g4750 | ATGGAAGGAGAAGTTTGCTCGGCTGTTAGTTCTTCGCCAACTGGTTCAGAGAAGAGGAAGCAAAGGCATCAGAATCATCTTCAACAAGAAAAACCCTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCGGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCTTACACAACTCCGGTCGCCGCCGCCAGAGCTTACGACACCGCCGTGTTCTACCTCCGTGGCCCAACCGCCCGGCTAAATTTTCCGGAATTGATGTTCGAAGAGGACCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAAAGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAGACCTCGCTCCACGCCTCTAACTCAAACTCTCAAATTTCTGAGAAGCCCGATTTAAACGAGTACCCCAACCCCGAAAGCTCAGACGATGATTAA | 456 | 52.19 | MEGEVCSAVSSSPTGSEKRKQRHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEEDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSQISEKPDLNEYPNPESSDDD | 151 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 113328167 | 113330080 | + | Tan0020269.1 | Tan01g4750 | 742174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g4750 | 151 | CDD | AP2 | 33 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g4750 | 151 | ProSiteProfiles | AP2/ERF domain profile. | 32 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g4750 | 151 | MobiDBLite | consensus disorder prediction | 122 | 151 | - | - | |
Tan01g4750 | 151 | SMART | rav1_2 | 32 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g4750 | 151 | MobiDBLite | consensus disorder prediction | 122 | 138 | - | - | |
Tan01g4750 | 151 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Tan01g4750 | 151 | Gene3D | AP2/ERF domain | 31 | 90 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g4750 | 151 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 16 | 150 | - | - | |
Tan01g4750 | 151 | SUPERFAMILY | DNA-binding domain | 32 | 90 | IPR016177 | GO:0003677(InterPro) | |
Tan01g4750 | 151 | MobiDBLite | consensus disorder prediction | 16 | 32 | - | - | |
Tan01g4750 | 151 | FunFam | Ethylene-responsive transcription factor 2 | 31 | 90 | - | - | |
Tan01g4750 | 151 | Pfam | AP2 domain | 33 | 81 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g4750 | 151 | PRINTS | Ethylene responsive element binding protein signature | 33 | 44 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g4750 | 151 | PRINTS | Ethylene responsive element binding protein signature | 71 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4750 | Tan-Chr1:113328167 | Tan05g1640 | Tan-Chr5:42919343 | 1.90E-37 | dispersed | |
Tan01g3504 | Tan-Chr1:100198083 | Tan01g4750 | Tan-Chr1:113328167 | 1.80E-19 | transposed | |
Tan01g4750 | Tan-Chr1:113328167 | Tan02g1788 | Tan-Chr2:83138908 | 5.40E-48 | wgd | |
Tan01g4750 | Tan-Chr1:113328167 | Tan03g1563 | Tan-Chr3:71896518 | 1.60E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26592 | PF00847 | AP2 | 2.20E-11 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g4750 | K09286 | - | csv:101219005 | 271.937 |