Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4760 ATGGCTCTACCTCAGAATCAGTACCAACAACAGTATCAACCACCGCACCAACAGCAACAACAACAACATCAATCTATATCTTTTCGGAACTTGTACACTGCCGATGGTCAAGTTTCTCAACCGATCTCCTATTTCAACCCCTTCAATTTGCAGGATCATTCCCAGCATCCTCCCTACGTTCCTCCATTTCACGTAGTCGGGTTTGCACCAGGTACAGCCCCTGGCCCGGATGCCAGCGATGGAGCAGCAGATTTTCACTGGATGTATGGCATAGAAACCAAGAAGAAAAGATTGAAGGAGCAAGATCTTTTTGAAAATAATTCCCAAATATCATCCATTGACTTCTTGCAGCCACGTCCAGTTTCAACAGGACTGGGTTTATCGCTTGACAACACCAGAATGGCTTCTACAGGAGACTCGCCTTTGGTCTCTCTTATAGGCGAGGACATTGATCGGGAATTACAGCGGCAGGATGAAGATATTGAGAAGTTCCTCAAAGTTCAGGGCGATAGGCTACGACATACCATATTAGAGAAGATCCAAGCCAATCAACTCCAAACTCTCTCGATTGTGGAGGAAAAAATTATTCAGAAACTACGAGAAAAAGAAGAGGAGGTTGAGTGTATTAACAAGAAAAACATTGAGCTTGAACATCGAATGGAGCAGCTGTCAGTGGAAGCTGGTGCTTGGCAGCAGCGGGCTAGATATAACGAGAACATGATCACAGCCCTAAAGTTCAATCTTCAGCAGGTGTATGCTCAAAGCAGGGATAGCAAGGAAGGATGCGGGGATAGCGAGGTTGAAGACACTGCATCGTGCTGCAATGGTCGGTCGCTTGATTTTCAACTTCTTTGCAGCAACAGTAATGATATGAAGGAGTTGATGACTTGTAAGGGTTGCAGAGTTAATGAAGTCTGCATGCTTTTGTTGCCATGTAAGCATCTCTGCCTATGCAAGGAGTGCGAAACTAAGCTTGCCTTTTGCCCTCTGTGTCAATCCTCAAAATTCATAGGGATGGAAGTTTATATGTAA 1032 44.77 MALPQNQYQQQYQPPHQQQQQQHQSISFRNLYTADGQVSQPISYFNPFNLQDHSQHPPYVPPFHVVGFAPGTAPGPDASDGAADFHWMYGIETKKKRLKEQDLFENNSQISSIDFLQPRPVSTGLGLSLDNTRMASTGDSPLVSLIGEDIDRELQRQDEDIEKFLKVQGDRLRHTILEKIQANQLQTLSIVEEKIIQKLREKEEEVECINKKNIELEHRMEQLSVEAGAWQQRARYNENMITALKFNLQQVYAQSRDSKEGCGDSEVEDTASCCNGRSLDFQLLCSNSNDMKELMTCKGCRVNEVCMLLLPCKHLCLCKECETKLAFCPLCQSSKFIGMEVYM 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113421858 113426539 - Tan0015575.1 Tan01g4760 742184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4760 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 343 IPR013083 -
Tan01g4760 343 ProSiteProfiles Zinc finger RING-type profile. 297 332 IPR001841 -
Tan01g4760 343 CDD mRING-HC-C3HC5_CGRF1-like 296 331 - -
Tan01g4760 343 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 94 343 - GO:0004842(PANTHER)
Tan01g4760 343 Pfam Zinc finger, C3HC4 type (RING finger) 295 333 - -
Tan01g4760 343 MobiDBLite consensus disorder prediction 1 25 - -
Tan01g4760 343 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 279 343 - -
Tan01g4760 343 Coils Coil 192 233 - -
Tan01g4760 343 PIRSF SBP1_RNase_bind 5 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4760 K19042 - - csv:101215751 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4760 Tan-Chr1:113421858 Tan01g4762 Tan-Chr1:113421858 2.60E-159 dispersed
Tan01g4760 Tan-Chr1:113421858 Tan01g4761 Tan-Chr1:113421858 2.90E-182 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g751 Blo01g01524 Blo12g00960 Bda01g00572 . Bpe02g00433 . Bma04g00159 Bma01g02268 . . Cma01g01830 Cma09g00242 Car01g01428 . . Cpe06g00167 . . . . . . . . . . . . . . . Cone4ag1584 Cone7ag1365 Cone17ag0847 Cone20ag0195 Lsi04g01547 Csa04g02422 . . Blo17g00879 . . . . Bpe05g00027 . . Sed01g2676 Cmo01g01889 Cmo09g00236 . . . Car09g00202 . Cpe02g00188 Bhi09g03306 Tan01g4760 Cmetu07g0261 . Hepe01g1776 Mch11g0302 . Cla05g02053 Cam05g2206 Cec05g2222 Cco05g2265 Clacu05g2198 Cmu05g2064 Cre05g2190 . . Chy07g00143 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004711 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 41