Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4766 ATGGAAAATGATCATCTGAAATCGGAGGATCAGATGGAGATTATCATGATGATGCAACAAATGGACAAAATCCCAGAGTTTTGCAGTGCTTACAATGATCTCTCGCCCGCGTCTGATTTCAGCTCAAGCAGCAATAACATCAGCACCACAGACCCACATTGCCTCGAAAGCCTTCAACAAGCCGCAGAGTCATCGCCTCCATTATTCATGAACCTACCTCTGCCCCCAAGTGTTGAACAACCCTCGGTTTTGGCGGCAACAGCTCCATTCCCCAACGGTTCACGGTGGCGAAGTTCAATGCTTTCCAGTGGCGAAACAGACTCGCAGAAGCAGCGGTCGGTGGCAGCGATGAGGGAGATGATATTCCGAATGGCAGTGATGCAGCCAATTCACATAGACCCAGAATCAGTGAAGCCGCCAAAAAGAAGGAACGTGAAGATTTCAACAGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAGAGAATAAGCGAGAGAATTAGGATACTTCAAAGACTGGTCCCTGGAGGTACAAAAATGGACACAGCTTCGATGTTGGACGAAGCCATACATTACGTAAAATTCTTAAAGACACAAGTGCAGTCGCTCGAACGAGCTGCGGCTAACAGACCAATCGGTAGCAGTGCCGGTACTGTAGCAGGTGGCGTAGGGTTTCCTTTGGAAATGTCAAGTGGGAGCTATGTTCCCATCGCTAAACCTTCCCCAATGCCTCACAACGTTGAGCAATTCGGAGATGCTTAA 762 48.95 MENDHLKSEDQMEIIMMMQQMDKIPEFCSAYNDLSPASDFSSSSNNISTTDPHCLESLQQAAESSPPLFMNLPLPPSVEQPSVLAATAPFPNGSRWRSSMLSSGETDSQKQRSVAAMREMIFRMAVMQPIHIDPESVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPIGSSAGTVAGGVGFPLEMSSGSYVPIAKPSPMPHNVEQFGDA 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113495252 113496013 + Tan0012742.1 Tan01g4766 742190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4766 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983(InterPro)
Tan01g4766 253 FunFam BHLH transcription factor 150 212 - -
Tan01g4766 253 MobiDBLite consensus disorder prediction 134 159 - -
Tan01g4766 253 Gene3D - 150 211 IPR036638 GO:0046983(InterPro)
Tan01g4766 253 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 36 218 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4766 253 SMART finulus 153 202 IPR011598 GO:0046983(InterPro)
Tan01g4766 253 Pfam Helix-loop-helix DNA-binding domain 156 197 IPR011598 GO:0046983(InterPro)
Tan01g4766 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 205 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4766 Tan-Chr1:113495252 Tan05g1685 Tan-Chr5:49618688 6.50E-38 dispersed
Tan03g0769 Tan-Chr3:63654686 Tan01g4766 Tan-Chr1:113495252 5.40E-21 transposed
Tan03g1315 Tan-Chr3:69651855 Tan01g4766 Tan-Chr1:113495252 2.20E-35 transposed
Tan01g4766 Tan-Chr1:113495252 Tan02g1808 Tan-Chr2:83613506 7.60E-55 wgd
Tan01g4766 Tan-Chr1:113495252 Tan03g1549 Tan-Chr3:71794546 9.10E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26598 PF00010 HLH 1.70E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4766 - - - 0.0