Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4781 ATGAATGCTTTGGGGCTTCCTCTTTCATTCCACACAAACAAAGGGAAGAGACTTGGAATCACCACGGGTAAAAGAAAAGCAACTGTCAAGCAGTCTAGAATCCAGCAAGGGCTTCAAGACAAAGAAGTGGAGTTTCCCAAAGCAAGCAGCATGGAGGAGATTGTAGCTAACATTAGTTTCAATGATGACGTAATCGATCCTTTATGTTGCTTGTCTATGGTGCACCAAAGTGAGACATCTGATTGTGATATTGTATTGGATACCAATGAATCTCATGTCATCTTTGATGAAGATATTTCACCTAATTCAAGCAGACTTATCAGTGGTGCTGTCGAAGAACAATCTAGCGATGTTACATGCGATAGTGTGTTGAGGGATCATACAAAAGTTAGATTGAGTTCAATTGGTTTAGATAAAGGTGATTCTCCTAGAATATATATGACTGGTCTTGATATCAGCCATGACAAGCAGGAGGAAGTTGAACCACCTTTGGAGTCAGAAGGTTCATCCACGACTTTACAAGATACTGAAGTGCAGAAGATTGACATTGATAATGGCATTGGACTGCCAGTAGTAGCTGAATCATCTTTCTTTCATATGATAGCAGATTATAATGAAAATGACCATGTTGTTGGATGTATTCATGAATCTGGAGAATGGATGGTGTATTGGGATTCTTTTTATATGAGAAACTACTTCTATAATATAAAGACACACGAGTCTACTTGGAACCCTCCTCCAGGGTTGGAACATTTTGCACTTTCTGATGCCAACTTCACAGCAAATGAGTCAATTACTGAGGTTGCTGAAATGGATGTATTAGAAGATGTAAAATCAGAAGATATTTGTAATGTGCTTGGCGATACAAGGTCGTGCATGAATTTACCTGGTGATAATGTTCATTGTCAACCACCTGATGCACTGTTGGAGGGCTCTAGTATTTTAATTGAGGGCTCCAAGAGTAGTGAATTTCTCAATACTTCAATCAACAGTCATAAGCATTCTGATGAATCTCATGAGTGGCAGATGAGCTGCAGAAGTACCAGGGAAGATATTGGATGCAGTTGTGAAGGTCATGTCAAGCAACTATGTCATGAGAACTGCAGCAATGATTTCCAGCTCATTGTTGCAAATGGAGCTTCTGAACCAAAGATCTTCAACCATGGCAAACCCAGTAACATGAACTCACCTGAGATAGATTGTGTCACCAGAGATGATGACGAAGGTGCAGTGGGTTTAGGTACTAGCAGTGTTTCCCATATGCTTCAGCAGGCAGATCATAAGGATGGTGATATGAATTTTGGTAATGGACCCACCATATGTACACTGGGTACTGATCAAAATCTTGCTGGAAGAAATAGGAAAAAGAAAATGAAAAGAACACGCAAACGTGGACAATTATCTGATAGAAATGAAGAATTTCAATCTCTCGCAATCACTGAAGAGTATCCCACAAGTATTACTAAGTATTGGTGTCAGAGGTATCAACTTTTCTCCAGATTTGATGATGGTGTAAAAATGGACAAAGAAGGATGGTTTTCTGTAACTCCAGAGCCTATAGCTAAGCATCATGCATTACGCTGTGGTAGGAACATGATAATTGATTCTTTCACCGGAGTTGGTGGAAATGCCATCCAGTTTTCCCAAAGGGCCAAACATGTTATCGCAATTGATATTGATCCAACAAAGATTAGATATGCACAACATAACGCTGCCATATATGGTGTTGAAGATCAAATAGATTTCATAAAGGGGGACTTCTTCCGTTTGGCCCCAAGTCTCAAGGCCGATGTTGTATTCTTATCACCTCCTTGGGGAGGCCCTGATTATGCCAAAGTAGATATTTATGACCTTAAGTCCATGCTCAAACCACATGATGGGTATTTTCTCTTCAACATTGCTAAGGAAATTGCTCCCATTGTTGTAATGTTTCTTCCAAGGAATGTTAATCTTGACCAACTAGCGGAGCTGTCTCTTTCTTCAGATCCTCCGTGGTCACTTGAGGTTGAGAAAAACTTTTTAAATGGCAAGCTGAAGGCGATTACTGCTTACTTTAGCAAGGGCTCTATGAACAAACCCAATGTCATTTAA 2091 39.93 MNALGLPLSFHTNKGKRLGITTGKRKATVKQSRIQQGLQDKEVEFPKASSMEEIVANISFNDDVIDPLCCLSMVHQSETSDCDIVLDTNESHVIFDEDISPNSSRLISGAVEEQSSDVTCDSVLRDHTKVRLSSIGLDKGDSPRIYMTGLDISHDKQEEVEPPLESEGSSTTLQDTEVQKIDIDNGIGLPVVAESSFFHMIADYNENDHVVGCIHESGEWMVYWDSFYMRNYFYNIKTHESTWNPPPGLEHFALSDANFTANESITEVAEMDVLEDVKSEDICNVLGDTRSCMNLPGDNVHCQPPDALLEGSSILIEGSKSSEFLNTSINSHKHSDESHEWQMSCRSTREDIGCSCEGHVKQLCHENCSNDFQLIVANGASEPKIFNHGKPSNMNSPEIDCVTRDDDEGAVGLGTSSVSHMLQQADHKDGDMNFGNGPTICTLGTDQNLAGRNRKKKMKRTRKRGQLSDRNEEFQSLAITEEYPTSITKYWCQRYQLFSRFDDGVKMDKEGWFSVTPEPIAKHHALRCGRNMIIDSFTGVGGNAIQFSQRAKHVIAIDIDPTKIRYAQHNAAIYGVEDQIDFIKGDFFRLAPSLKADVVFLSPPWGGPDYAKVDIYDLKSMLKPHDGYFLFNIAKEIAPIVVMFLPRNVNLDQLAELSLSSDPPWSLEVEKNFLNGKLKAITAYFSKGSMNKPNVI 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 113791281 113800627 - Tan0022576.4 Tan01g4781 742205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4781 696 Gene3D - 214 263 - -
Tan01g4781 696 SUPERFAMILY WW domain 212 247 IPR036020 GO:0005515(InterPro)
Tan01g4781 696 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 482 689 - -
Tan01g4781 696 CDD AdoMet_MTases 533 631 - -
Tan01g4781 696 ProSitePatterns WW/rsp5/WWP domain signature. 220 246 IPR001202 GO:0005515(InterPro)
Tan01g4781 696 Pfam RNA cap guanine-N2 methyltransferase 531 687 IPR019012 GO:0001510(InterPro)|GO:0008168(InterPro)|GO:0036261(InterPro)
Tan01g4781 696 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 479 615 IPR029063 -
Tan01g4781 696 CDD WW 220 248 IPR001202 GO:0005515(InterPro)
Tan01g4781 696 PANTHER S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED 1 688 - GO:0005634(PANTHER)|GO:0036261(PANTHER)|GO:0071164(PANTHER)
Tan01g4781 696 Gene3D Vaccinia Virus protein VP39 480 692 IPR029063 -
Tan01g4781 696 ProSiteProfiles WW/rsp5/WWP domain profile. 220 248 IPR001202 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4781 K14292 - - csv:101215034 1109.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4781 Tan-Chr1:113791281 Tan01g4783 Tan-Chr1:113791281 0.00E+00 dispersed
Tan01g4780 Tan-Chr1:113791281 Tan01g4781 Tan-Chr1:113791281 0.00E+00 tandem
Tan01g4781 Tan-Chr1:113791281 Tan01g4782 Tan-Chr1:113791281 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g757 Blo01g01527 . Bda01g00568 . Bpe02g00429 . . . . . . Cma09g00232 . . . Cpe06g00162 . . . . . . . . . . . . . . . . Cone7ag1371 . . Lsi04g01559 Csa04g02411 . . . . . . . . . . . . Cmo09g00224 . . . Car09g00201 . . Bhi09g03317 Tan01g4781 . . . . . Cla05g02043 Cam05g2193 Cec05g2211 Cco05g2256 Clacu05g2187 Cmu05g2053 Cre05g2182 . . Chy07g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003746 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11 2 44