Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4821 ATGCAAAGCAACGGTTCTGATTCGCAGCCGCAGGAGCCAAATCAACGGCACCAACCGCAGCAGTCGTGGATGCCAATGCAGTACCCACCGCCGGCTATGGTAATGCCGCACCATATGATGACGCCGCAGCATTACATGGCGCCCCCGCTCCCACCACCGTATATGCATTATCACCACCAATATCAGCATCCCCATCTCCATATGCAGCATTCGCAGCCGCTACAGGGATCTGGCGGCGAAAACAAGACGATTTGGGTTGGTGACTTGCATCATTGGATGGATGAGACTTACCTCCATAACTGTTTTGGTTCCTTCGGCGAGATTTCATCTATCAAGGTCATTCGTAATAAGCAAACTGGTTTGTCTGAGGGTTATGGATTTGTAGAATTTTTTGCTCATGCAACAGCTGAGAAAGCTCTTCAGAACTATTCTGGAGTGTGCATGCCAAATACAGAGCAGGCTTTTCGCCTGAATTGGGCGACATTTAGTACCGGTGACAAACGATCAGATAATGATCCTGATCTTTCTATTTTTGTTGGAGATTTAGCCGCAGATGTTACTGATACTTTGTTGTACGAAACATTTTCTAGTAAATTTCCCTCTGTTAAAGCAGCAAAAGTTGTCATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTACGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGACTGAAATGAATGGTGTATATTGTTCAAGCAGACCTATGCGCATAGGTGCAGCAACGCCAAGAAAGTCTTCTGGATATCAGCAACAACATGTTTCATTAGGAGGATATTCAATAAATGGTTCCTTTGGCCAATCTGAAGGAGATTCGGCAAATACGACTATATTTGTTGGAGGGCTCGATCCTAATGTCACCGATGAAGATCTGAGGCAACCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTTGGTAAAGGATGCGGGTTTGTCCAATTTGCCAACAGAAATGATGCTGAAGAGGCTTTGCAAAAACTAAATGGAACTGTAATTGGGAAGCAAACTGTTCGTCTTTCATGGGGCCGAAATCCAGCAAATAAGCAGTTTAGAGATTTTGGGAACCAGTGGAATGGAGCTTACTATGGAGGGCACATATATGATGGCTATGGATATGGTCTTCCACCTCACGATCCAAGTATGTATCACGCAGCTTATGGAGCTTACCCTGTCTATGGAAGTCATCAACAACAAGTAATCTGA 1245 44.66 MQSNGSDSQPQEPNQRHQPQQSWMPMQYPPPAMVMPHHMMTPQHYMAPPLPPPYMHYHHQYQHPHLHMQHSQPLQGSGGENKTIWVGDLHHWMDETYLHNCFGSFGEISSIKVIRNKQTGLSEGYGFVEFFAHATAEKALQNYSGVCMPNTEQAFRLNWATFSTGDKRSDNDPDLSIFVGDLAADVTDTLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQHVSLGGYSINGSFGQSEGDSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRDFGNQWNGAYYGGHIYDGYGYGLPPHDPSMYHAAYGAYPVYGSHQQQVI 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 114035013 114039063 + Tan0013539.1 Tan01g4821 742245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4821 414 FunFam Polyadenylate-binding protein RBP47B 163 265 - -
Tan01g4821 414 SUPERFAMILY RNA-binding domain, RBD 158 274 IPR035979 GO:0003676(InterPro)
Tan01g4821 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 162 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 CDD RRM1_SECp43_like 83 163 - -
Tan01g4821 414 CDD RRM3_NGR1_NAM8_like 285 356 - -
Tan01g4821 414 SMART rrm1_1 83 158 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 SMART rrm1_1 287 354 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 SMART rrm1_1 176 250 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 SUPERFAMILY RNA-binding domain, RBD 278 378 IPR035979 GO:0003676(InterPro)
Tan01g4821 414 Gene3D - 81 160 IPR012677 -
Tan01g4821 414 CDD RRM2_SECp43_like 174 253 - -
Tan01g4821 414 Gene3D - 275 387 IPR012677 -
Tan01g4821 414 Pfam RNA recognition motif 288 351 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 Pfam RNA recognition motif 84 151 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 Pfam RNA recognition motif 177 246 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 254 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 FunFam Polyadenylate-binding protein RBP47 268 387 - -
Tan01g4821 414 SUPERFAMILY RNA-binding domain, RBD 46 164 IPR035979 GO:0003676(InterPro)
Tan01g4821 414 FunFam Polyadenylate-binding protein RBP47B 81 161 - -
Tan01g4821 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 358 IPR000504 GO:0003723(InterPro)
Tan01g4821 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 59 359 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Tan01g4821 414 MobiDBLite consensus disorder prediction 1 23 - -
Tan01g4821 414 MobiDBLite consensus disorder prediction 1 28 - -
Tan01g4821 414 Gene3D - 161 271 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4821 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4821 Tan-Chr1:114035013 Tan01g4823 Tan-Chr1:114035013 2.80E-187 dispersed
Tan11g1457 Tan-Chr11:13068592 Tan01g4821 Tan-Chr1:114035013 3.90E-06 dispersed
Tan11g1458 Tan-Chr11:13068592 Tan01g4821 Tan-Chr1:114035013 3.90E-06 dispersed
Tan01g4821 Tan-Chr1:114035013 Tan01g4822 Tan-Chr1:114035013 1.30E-213 tandem
Tan02g0661 Tan-Chr2:6127847 Tan01g4821 Tan-Chr1:114035013 1.10E-14 transposed
Tan03g1364 Tan-Chr3:70098714 Tan01g4821 Tan-Chr1:114035013 8.40E-12 transposed
Tan04g1214 Tan-Chr4:11384318 Tan01g4821 Tan-Chr1:114035013 2.80E-06 transposed
Tan08g2320 Tan-Chr8:74496824 Tan01g4821 Tan-Chr1:114035013 1.00E-10 transposed
Tan01g4821 Tan-Chr1:114035013 Tan02g1894 Tan-Chr2:87135605 5.80E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117