Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4848 ATGGAAATCGACTATATTCGGAAAACGACCGCCGCCCGCGGCGGAAAAGCCGCTCAGCCACTGAACCGTCCGACCCCCACCGCTTCCTTCATTGCCCGCCGCCAGCTTCTAACCTTTCACAAGAGTTATGATTTGCCCGACGATTACGAGTCCAAAATCGTGGTCACTGAAACCTTTCCAAATCCCAGGCTCCGACGGGCTTTCATCGCCCTTCAAGCCTGGAAGAAGGCCATTTATTCCGACCCTTTCAACACCACCGCCAATTGGGTCGGCGCCGATGTCTGTTCCTACACCGGAGTTTTCTGCGCCCCTGCTCTCGACGACTCCAAAATCGAAGTCGTCGCCGGAATTGACATCAACCACGCCGACATCGCCGGTTACCTGCCCGTGGAGCTCGGTCTACTGACCGACATTGCGTTGTTTCACATCAACACCAACCGATTCTGCGGCATTATCCCCTCAAGCTTCGAGAGGCTGATTCTGCTTCACGAGCTGGACGTTAGCAACAACAGATTCGTGGGCCCTTTCCCTGAAGTCGTTGTGAAGATTCCAAATTTGAAATTTCTCGATATCAGATACAATGATTTCGAAGGCGAATTGCCTCCTGCGCTTTTCACTAAGGAACTCGATGCCATTTTCCTCAACAACAACAGATTCACCTCCTTCATTCCGGAGAATTTCGGCGACTCGCCGGCGTCGGTGATCGTGATTGCCAACAACAATTTCACAGGATGCATTCCGAGCAGCATTGGGAAAATGGGGAACACGTTGAACCAGGTTATAATGTTGAACAATGAATTTGTGGGTTGTTTGCCTGGTGAAATTGGGATGCTTGGAAATGCGACCGTTTTCGATGTTTCTTCCAATCAATTGAGTGGGATCTTGCCGAAGACCTTCGATGGGTTGAAGAAGGTCGAGATTATGGATATTTCTTCCAATTTTTTGACTGGTGTCGTGCAGGATGGTTTGTGTAATTTGCCCAAATTGGCTGATTTCACATTCTCTAACAATTTCTTCAATGGCGAGGCTGATAGGTGCGTCCCGCAGAATAGAAAAGATATTTTCTTGGATGACGGTAACAATTGCTTGCCGGAGAGACCCAAGCAGAAGGCGGCCGAGACTTGTAGTCCGGTGATCAGCAAGGCCGTTGATTGCAGTAAGGCTAAGTGCGGCGGAGGGTCTTCATCTTCGTCGCCGTCGCCGTCGCCGTCGAAGCCGCAGCCACCTAAGCATGACATTTCTGTACCAGAGACACCCAAATCAACGCCTGAAGCACCAAAATCGCCACCAGTTCCTGAGACGGGGACACGAAAATCATCACCGCCAGTTCCTGAAACAGACGCACCAAAATCATCGCCGCCAGTCCCTGAGACTGAAGCACCAAAATCATCATCGCCAGTTCCAGAGCCTGAGGCACCAAATTCGTCACCAGTGCCGGAGCCTGAAAGCCCAAATGCTCCACCTCCACCCATCGATGATCCTCATGATCAATCACCGGTTCCAAGATACCGTCCTCCTCCTCCACCTGCAGTGCACTCACCCCCAACACCGGTTTCATCTCCCCCACCACCGGTTTCATCTCCTCCACCGCCGGTCCACTTTCCCCCACCACCAGTTTCTTCACCACCACCACCAGTCCACTCTCCACCACCACCGGTTTCCTCACCCCCACCACCGGTTTCCTCACCCCCACCACCGGTTTCCTCACCCCCACCACCAGTCCACTCTCCACCACCACCCGTTTCCTCACCTCCACCACCAGTCCACTCTCCACCACCACCGGTGTCCTCACCTCCACCGCCAGTCTACTCACCTCCACCGCCGGTCTACTCTCCACCACCACCGGTTTACTCTCCACCACCACCCGTTGCATCACCCCCACCACCGGTTTACTCTCCACCACCACCGGTTGCCTCACCCCCACCACCAGTTTTCTCGCCACCACCACCGGTTTACTCTCCGCCACCACCACCGGTCTACTCTCCACCACCACCAGTGCACTCGCCTCCTCCTCCAGTCTATTCACCACCGCCTCCAGTCCAGTCTCCACCACCTCCGGTATTCTCTCCGCCGCCACCTTCCCCATCTCCCTCTCCTCCTCCTCCGGTCGCCTCTCCGCCGCCACCACTAGAGGAAATCATTCTTCCACCAAACTTGGGCTTCCAGTACTCATCACCGCCTCCACCAATGTTCCCCGGCTACTAA 2205 54.47 MEIDYIRKTTAARGGKAAQPLNRPTPTASFIARRQLLTFHKSYDLPDDYESKIVVTETFPNPRLRRAFIALQAWKKAIYSDPFNTTANWVGADVCSYTGVFCAPALDDSKIEVVAGIDINHADIAGYLPVELGLLTDIALFHINTNRFCGIIPSSFERLILLHELDVSNNRFVGPFPEVVVKIPNLKFLDIRYNDFEGELPPALFTKELDAIFLNNNRFTSFIPENFGDSPASVIVIANNNFTGCIPSSIGKMGNTLNQVIMLNNEFVGCLPGEIGMLGNATVFDVSSNQLSGILPKTFDGLKKVEIMDISSNFLTGVVQDGLCNLPKLADFTFSNNFFNGEADRCVPQNRKDIFLDDGNNCLPERPKQKAAETCSPVISKAVDCSKAKCGGGSSSSSPSPSPSKPQPPKHDISVPETPKSTPEAPKSPPVPETGTRKSSPPVPETDAPKSSPPVPETEAPKSSSPVPEPEAPNSSPVPEPESPNAPPPPIDDPHDQSPVPRYRPPPPPAVHSPPTPVSSPPPPVSSPPPPVHFPPPPVSSPPPPVHSPPPPVSSPPPPVSSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVYSPPPPVYSPPPPVYSPPPPVASPPPPVYSPPPPVASPPPPVFSPPPPVYSPPPPPVYSPPPPVHSPPPPVYSPPPPVQSPPPPVFSPPPPSPSPSPPPPVASPPPPLEEIILPPNLGFQYSSPPPPMFPGY 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 114211412 114213831 - Tan0010205.1 Tan01g4848 742272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4848 734 MobiDBLite consensus disorder prediction 664 734 - -
Tan01g4848 734 SUPERFAMILY L domain-like 69 357 - -
Tan01g4848 734 MobiDBLite consensus disorder prediction 387 648 - -
Tan01g4848 734 MobiDBLite consensus disorder prediction 664 714 - -
Tan01g4848 734 PRINTS Pistil-specific extensin-like signature 581 599 IPR003882 -
Tan01g4848 734 PRINTS Pistil-specific extensin-like signature 547 570 IPR003882 -
Tan01g4848 734 PRINTS Pistil-specific extensin-like signature 695 716 IPR003882 -
Tan01g4848 734 Pfam Leucine Rich Repeat 185 204 IPR001611 GO:0005515(InterPro)
Tan01g4848 734 Gene3D Ribonuclease Inhibitor 68 363 IPR032675 -
Tan01g4848 734 MobiDBLite consensus disorder prediction 446 648 - -
Tan01g4848 734 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 645 IPR051582 -
Tan01g4848 734 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
Tan01g4848 734 Pfam Leucine rich repeat 282 337 IPR001611 GO:0005515(InterPro)
Tan01g4848 734 Pfam Leucine rich repeat N-terminal domain 70 102 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4848 Tan-Chr1:114211412 Tan06g2003 Tan-Chr6:64911250 6.40E-54 dispersed
Tan01g4848 Tan-Chr1:114211412 Tan09g1311 Tan-Chr9:65422738 1.40E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4848 - - - 0.0