Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4854 ATGTTTTTGACTTCCAAAGCCCTTGTGATGAACACGCCGTCTTCCTTGCCGGATCTCTCCTTGCAGATCAGCCTCTCGTCATCGTTGCTTCCGCCGAGTGAGAAGGCCAAGCCACGGAGCTCGACGACGACAACGACTGATTCCGATTGCAGTGGGAGAAGTGATTTGAGCCATGAAAATGGTCTCTTTCGCTTAGGGTTTGAAGTTGGGGATGTGGGTTGTCTTCCTCCTCCTCCGCGTCATTACCAAGCTTGTAATGTCATCCATGGCCGTCGCGACTTTAAACGAAGTGGCGGCGGGGTCGGGTGTGGAGTTAGAAGAAGCATCCGAGCTCCTAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACCGAACAGTGAAGAATACTGTCAAAGGAACAGATGATTGTGGAAGGCCTGATCTTGAAGCAGATACGATTTTATCTTCTTCCTCTTCTTCTTCATCTGTTAAAAAATCTAACCTTCAATCGCCTCATTTGCAGAGAATCCAAAGTAGTAGTTTGGTAACATCAATGCACAAGAGCAGCGAGAAGACCAAGTCAAACGGCGACGCTTTCGCTAAATCCAGAGAAATGAAGGTTGAAGGAATCAACAGAGATTATCACGAGGCTCTCACTATGCAGCGAATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGGTGACGCAAATGAGATTGCACTCCTCAATTGCTAA 849 45.94 MFLTSKALVMNTPSSLPDLSLQISLSSSLLPPSEKAKPRSSTTTTTDSDCSGRSDLSHENGLFRLGFEVGDVGCLPPPPRHYQACNVIHGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRPDLEADTILSSSSSSSSVKKSNLQSPHLQRIQSSSLVTSMHKSSEKTKSNGDAFAKSREMKVEGINRDYHEALTMQRINLEFTLGRPSWQLDYGDANEIALLNC 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 114254903 114261606 + Tan0005402.1 Tan01g4854 742278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4854 282 Gene3D - 111 168 - -
Tan01g4854 282 Pfam Myb-like DNA-binding domain 113 164 IPR001005 -
Tan01g4854 282 SUPERFAMILY Homeodomain-like 109 166 IPR009057 -
Tan01g4854 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 165 IPR006447 GO:0003677(InterPro)
Tan01g4854 282 FunFam Myb family transcription factor 110 168 - -
Tan01g4854 282 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 12 269 IPR044847 GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Tan01g4854 282 MobiDBLite consensus disorder prediction 184 233 - -
Tan01g4854 282 MobiDBLite consensus disorder prediction 184 222 - -
Tan01g4854 282 MobiDBLite consensus disorder prediction 29 53 - -
Tan01g4854 282 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4854 Tan-Chr1:114254903 Tan07g2007 Tan-Chr7:71775286 9.50E-30 dispersed
Tan01g4854 Tan-Chr1:114254903 Tan02g1912 Tan-Chr2:87549699 1.80E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26603 PF00249 Myb_DNA-binding 1.30E-05 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4854 - - - 0.0