Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g4854 | ATGTTTTTGACTTCCAAAGCCCTTGTGATGAACACGCCGTCTTCCTTGCCGGATCTCTCCTTGCAGATCAGCCTCTCGTCATCGTTGCTTCCGCCGAGTGAGAAGGCCAAGCCACGGAGCTCGACGACGACAACGACTGATTCCGATTGCAGTGGGAGAAGTGATTTGAGCCATGAAAATGGTCTCTTTCGCTTAGGGTTTGAAGTTGGGGATGTGGGTTGTCTTCCTCCTCCTCCGCGTCATTACCAAGCTTGTAATGTCATCCATGGCCGTCGCGACTTTAAACGAAGTGGCGGCGGGGTCGGGTGTGGAGTTAGAAGAAGCATCCGAGCTCCTAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACCGAACAGTGAAGAATACTGTCAAAGGAACAGATGATTGTGGAAGGCCTGATCTTGAAGCAGATACGATTTTATCTTCTTCCTCTTCTTCTTCATCTGTTAAAAAATCTAACCTTCAATCGCCTCATTTGCAGAGAATCCAAAGTAGTAGTTTGGTAACATCAATGCACAAGAGCAGCGAGAAGACCAAGTCAAACGGCGACGCTTTCGCTAAATCCAGAGAAATGAAGGTTGAAGGAATCAACAGAGATTATCACGAGGCTCTCACTATGCAGCGAATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGGTGACGCAAATGAGATTGCACTCCTCAATTGCTAA | 849 | 45.94 | MFLTSKALVMNTPSSLPDLSLQISLSSSLLPPSEKAKPRSSTTTTTDSDCSGRSDLSHENGLFRLGFEVGDVGCLPPPPRHYQACNVIHGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRPDLEADTILSSSSSSSSVKKSNLQSPHLQRIQSSSLVTSMHKSSEKTKSNGDAFAKSREMKVEGINRDYHEALTMQRINLEFTLGRPSWQLDYGDANEIALLNC | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 114254903 | 114261606 | + | Tan0005402.1 | Tan01g4854 | 742278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g4854 | 282 | Gene3D | - | 111 | 168 | - | - | |
Tan01g4854 | 282 | Pfam | Myb-like DNA-binding domain | 113 | 164 | IPR001005 | - | |
Tan01g4854 | 282 | SUPERFAMILY | Homeodomain-like | 109 | 166 | IPR009057 | - | |
Tan01g4854 | 282 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 112 | 165 | IPR006447 | GO:0003677(InterPro) | |
Tan01g4854 | 282 | FunFam | Myb family transcription factor | 110 | 168 | - | - | |
Tan01g4854 | 282 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 12 | 269 | IPR044847 | GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) | |
Tan01g4854 | 282 | MobiDBLite | consensus disorder prediction | 184 | 233 | - | - | |
Tan01g4854 | 282 | MobiDBLite | consensus disorder prediction | 184 | 222 | - | - | |
Tan01g4854 | 282 | MobiDBLite | consensus disorder prediction | 29 | 53 | - | - | |
Tan01g4854 | 282 | MobiDBLite | consensus disorder prediction | 29 | 51 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4854 | Tan-Chr1:114254903 | Tan07g2007 | Tan-Chr7:71775286 | 9.50E-30 | dispersed | |
Tan01g4854 | Tan-Chr1:114254903 | Tan02g1912 | Tan-Chr2:87549699 | 1.80E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26603 | PF00249 | Myb_DNA-binding | 1.30E-05 | CL0123 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g4854 | - | - | - | 0.0 |