Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4896 ATGGTTGATTTGGAAAATTCTTCACCGGTTGCGGTTTCTGGAGATGCTGGTTTATCTTCGTCAGGTTATATTGAACCGGTGACGGTGGTGGCTCCGCCGAAGAAGAAACGGAACCTGCCTGGAATGCCAGATCCGGCGGCGGAGGTGATTGCTTTATCGCCAGAGAGTTTACTGGCCACCAACCGGTTCGTGTGCGAGATCTGCAACAAAGGTTTCCAGCGGGACCAGAACCTGCAACTTCACCGGCGAGGCCACAACCTTCCGTGGAAGCTCCGGCAGCGGACCAGCAATGAGGTGCGTAAGCGCGTCTATGTCTGCCCGGAGCCTTCCTGCGTGCACCATAATCCGGCAAGAGCGCTCGGCGATCTCACTGGAATAAAGAAGCACTTCTGTAGAAAGCACGGGGAGAAGAAGTGGAAGTGCGAGAGATGCTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCAAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTATTGGCGGAGGAAAGTGCTCGTGCTCAAACCCTAGTAGTTCCAAACTCTGAAGGAAAGGAATCGGCCACTTCGAAAGCCGCCATGGCTTCGCCTCCTCCGCCGCCGCTAACTCCGTCGACCACGGTGGTTTCTCCAGCGTTGTCAATTCACAGCTCAGAGCTAGCTGATAATCCGATAAGACTTCCATCAGTATCAAAGGCCGCAGCCACGACATGCTTGACCTCCGCGGCTGTCAATAGTACCACAAATGCAAGCGCCAACAGCAGTAGCTCAAACGATTTGTTTGGAAATAGTACTGTTTTTGCTCCTCCTGCGTCAATTTCAGTGACGACCCAAATATCCCCAACATTACCACCACCCAGTTTACCGACCTCAATAGTACCCTACGATTGCCCTTCTACTCGCCCTCCCGTTTCCGCCATTAATCCCACATCGCTTTCTCTCTCCACATCTCTCTATCTTTCCACTAAAGGATCCTCGCTCTTTGCCCCACCCGACCAAGACCGTCTGCAGTACACGTGGTCCACTCAACCGGCGGCCATGTCCGCCACCGCTTTGCTGCAAAAGGCAGCGGAAATGGGGGCAACGGCGTCTAATCCGTCGTTGTTCCGTGGCTTTGGGATGGCTACTTCTTCTTCTGGTCAAGATAGCTCTTCCACTGCTCAATGGAGTAGGAATGTGAACCGAGAACACCGGAATGGCGCTTCGTTAGCGGCTGGTTTAGGGCTTGAACTTCCCTCCGGACCCGCCGGTTCTGGTATGATGATGGCGGGTGGTCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGAGATCTTCTTGGCCTTGGCTTAGGCGGCGGTGGGGCCTCTGCAAGTAGATTTTCAGCCTTGATTGCTTCCATGGGTGGTGGGTCTGGTTACGAAGTTGCATCTTCAGTCGCCTGCGGTGGAAGTGGCGACGGAAGCTCATCCGGCGACGCTTGGGATCGAGATCACGAAAAAGATGAAAAACATTGA 1566 53.0 MVDLENSSPVAVSGDAGLSSSGYIEPVTVVAPPKKKRNLPGMPDPAAEVIALSPESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARAQTLVVPNSEGKESATSKAAMASPPPPPLTPSTTVVSPALSIHSSELADNPIRLPSVSKAAATTCLTSAAVNSTTNASANSSSSNDLFGNSTVFAPPASISVTTQISPTLPPPSLPTSIVPYDCPSTRPPVSAINPTSLSLSTSLYLSTKGSSLFAPPDQDRLQYTWSTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATSSSGQDSSSTAQWSRNVNREHRNGASLAAGLGLELPSGPAGSGMMMAGGPFCSFGSQPMTRDLLGLGLGGGGASASRFSALIASMGGGSGYEVASSVACGGSGDGSSSGDAWDRDHEKDEKH 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 114873037 114876716 - Tan0000995.1 Tan01g4896 742320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4896 521 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Tan01g4896 521 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Tan01g4896 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 467 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g4896 521 MobiDBLite consensus disorder prediction 202 231 - -
Tan01g4896 521 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Tan01g4896 521 FunFam protein indeterminate-domain 12-like 42 110 - -
Tan01g4896 521 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 204 - -
Tan01g4896 521 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 138 162 - -
Tan01g4896 521 Gene3D Classic Zinc Finger 63 105 - -
Tan01g4896 521 Gene3D Classic Zinc Finger 118 197 - -
Tan01g4896 521 MobiDBLite consensus disorder prediction 497 521 - -
Tan01g4896 521 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Tan01g4896 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Tan01g4896 521 Pfam Zinc-finger of C2H2 type 63 85 IPR013087 -
Tan01g4896 521 SMART c2h2final6 139 159 IPR013087 -
Tan01g4896 521 SMART c2h2final6 63 85 IPR013087 -
Tan01g4896 521 SMART c2h2final6 104 134 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4896 Tan-Chr1:114873037 Tan03g1964 Tan-Chr3:74745935 2.50E-113 dispersed
Tan01g4896 Tan-Chr1:114873037 Tan01g4897 Tan-Chr1:114873037 9.20E-281 tandem
Tan02g0339 Tan-Chr2:2821697 Tan01g4896 Tan-Chr1:114873037 5.60E-09 transposed
Tan05g2159 Tan-Chr5:72342585 Tan01g4896 Tan-Chr1:114873037 4.40E-60 transposed
Tan06g0852 Tan-Chr6:7114081 Tan01g4896 Tan-Chr1:114873037 2.60E-77 transposed
Tan01g4896 Tan-Chr1:114873037 Tan02g1942 Tan-Chr2:88019556 1.50E-110 wgd
Tan01g4896 Tan-Chr1:114873037 Tan03g1962 Tan-Chr3:74734412 3.10E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26604 PF12874 zf-met 0.0038 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4896 K25869 - mdm:114826446 511.531