Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g4897 | ATGGTTGATTTGGAAAATTCTTCACCGGTTGCGGTTTCTGGAGATGCTGGTTTATCTTCGTCAGGTTATATTGAACCGGTGACGGTGGTGGCTCCGCCGAAGAAGAAACGGAACCTGCCTGGAATGCCAGATCCGGCGGCGGAGGTGATTGCTTTATCGCCAGAGAGTTTACTGGCCACCAACCGGTTCGTGTGCGAGATCTGCAACAAAGGTTTCCAGCGGGACCAGAACCTGCAACTTCACCGGCGAGGCCACAACCTTCCGTGGAAGCTCCGGCAGCGGACCAGCAATGAGGTGCGTAAGCGCGTCTATGTCTGCCCGGAGCCTTCCTGCGTGCACCATAATCCGGCAAGAGCGCTCGGCGATCTCACTGGAATAAAGAAGCACTTCTGTAGAAAGCACGGGGAGAAGAAGTGGAAGTGCGAGAGATGCTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCAAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTATTGGCGGAGGAAAGTGCTCGTGCTCAAACCCTAGTAGTTCCAAACTCTGAAGGAAAGGAATCGGCCACTTCGAAAGCCGCCATGGCTTCGCCTCCTCCGCCGCCGCTAACTCCGTCGACCACGGTGGTTTCTCCAGCGTTGTCAATTCACAGCTCAGAGCTAGCTGATAATCCGATAAGACTTCCATCAGTATCAAAGGCCGCAGCCACGACATGCTTGACCTCCGCGGCTGTCAATAGTACCACAAATGCAAGCGCCAACAGCAGTAGCTCAAACGATTTGTTTGGAAATAGTACTGTTTTTGCTCCTCCTGCGTCAATTTCAGTGACGACCCAAATATCCCCAACATTACCACCACCCAGTTTACCGACCTCAATAGTACCCTACGATTGCCCTTCTACTCGCCCTCCCGTTTCCGCCATTAATCCCACATCGCTTTCTCTCTCCACATCTCTCTATCTTTCCACTAAAGGATCCTCGCTCTTTGCCCCACCCGACCAAGACCGTCTGCAGTACACGTGGTCCACTCAACCGGCGGCCATGTCCGCCACCGCTTTGCTGCAAAAGGCAGCGGAAATGGGGGCAACGGCGTCTAATCCGTCGTTGTTCCGTGGCTTTGGGATGGCTACTTCTTCTTCTGGTCAAGATAGCTCTTCCACTGCTCAATGGAGTAGGAATGTGAACCGAGAACACCGGAATGGCGCTTCGTTAGCGGCTGGTTTAGGGCTTGAACTTCCCTCCGGACCCGCCGGTTCTGGTATGATGATGGCGGGTGGTCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGAGATCTTCTTGGCCTTGGCTTAGGCGGCGGTGGGGCCTCTGCAAGTAGATTTTCAGCCTTGATTGCTTCCATGGGTGGTGGGTCTGGTTACGAAGTTGCATCTTCAGTCGCCTGCGGTGGAAGTGGCGACGGAAGCTCATCCGGCGACGCTTGGGATCGAGATCACGAAAAAGATGAAAAACATTGA | 1566 | 53.0 | MVDLENSSPVAVSGDAGLSSSGYIEPVTVVAPPKKKRNLPGMPDPAAEVIALSPESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARAQTLVVPNSEGKESATSKAAMASPPPPPLTPSTTVVSPALSIHSSELADNPIRLPSVSKAAATTCLTSAAVNSTTNASANSSSSNDLFGNSTVFAPPASISVTTQISPTLPPPSLPTSIVPYDCPSTRPPVSAINPTSLSLSTSLYLSTKGSSLFAPPDQDRLQYTWSTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATSSSGQDSSSTAQWSRNVNREHRNGASLAAGLGLELPSGPAGSGMMMAGGPFCSFGSQPMTRDLLGLGLGGGGASASRFSALIASMGGGSGYEVASSVACGGSGDGSSSGDAWDRDHEKDEKH | 521 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 114873037 | 114876716 | - | Tan0000995.2 | Tan01g4897 | 742321 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g4897 | 521 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Tan01g4897 | 521 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 117 | 196 | - | - | |
Tan01g4897 | 521 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 32 | 467 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Tan01g4897 | 521 | MobiDBLite | consensus disorder prediction | 202 | 231 | - | - | |
Tan01g4897 | 521 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 100 | 134 | - | - | |
Tan01g4897 | 521 | FunFam | protein indeterminate-domain 12-like | 42 | 110 | - | - | |
Tan01g4897 | 521 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 165 | 204 | - | - | |
Tan01g4897 | 521 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 138 | 162 | - | - | |
Tan01g4897 | 521 | Gene3D | Classic Zinc Finger | 63 | 105 | - | - | |
Tan01g4897 | 521 | Gene3D | Classic Zinc Finger | 118 | 197 | - | - | |
Tan01g4897 | 521 | MobiDBLite | consensus disorder prediction | 497 | 521 | - | - | |
Tan01g4897 | 521 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 160 | IPR036236 | - | |
Tan01g4897 | 521 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
Tan01g4897 | 521 | Pfam | Zinc-finger of C2H2 type | 63 | 85 | IPR013087 | - | |
Tan01g4897 | 521 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
Tan01g4897 | 521 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
Tan01g4897 | 521 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4897 | Tan-Chr1:114873037 | Tan03g1964 | Tan-Chr3:74745935 | 2.50E-113 | dispersed | |
Tan01g4896 | Tan-Chr1:114873037 | Tan01g4897 | Tan-Chr1:114873037 | 9.20E-281 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26605 | PF12874 | zf-met | 0.0038 | CL0361 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g4897 | K25869 | - | mdm:114826446 | 511.531 |