Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4934 ATGTCTGTCGACACCAACGTGAGATCTTTCTCCTCCCTCGAGAATGACCGAGGTTCGTCCACGACGGCCGTGAAGATACAGGTTTGTGGGAGTAAAGATGGGAGAGTTTGGGATGACGGAGTTTATTCTGACGTCAGACGGCTTGTAATTGAACATGACAACAAAAACATATGTTCTGTTCAGATTGAGTATATTGATAAAAATGGGCAATCGAAATGGCATTCCTCATCCAATCATGGTCGACACGATGGGTCGATTGATAAGGTTGATTTAGATTATCCGAACGAGTATCTCATTTCAATTCATGGCTACTATCACGAAGATACATATAAGAAATGGATAAAATCGCTGACTTTTGAAAGTAATACACGAAATTGGGGCCCATATGGTGAGGAAAAAGGAACCAAATTTTCATTCCCAATTATGGGGGCCAAGATTATTGGGTTCCATGGCTGGAGTGGTTCGGTTCTCCTCAATGCAATTGGAGTATACGTGCAACCAGTTATAAAAAGCATGCGCCAAGTCAAGCCCGAGGCAGAGCCCCAACCACTACTCCCACTTGAGCATTATTATAGCTTGGGACAATATGGGCGTGAAGATGGAGAATGTTGGGTCGAGACTTTTCGAACAATCAAACGATTGATAATTTACAGTGATGGTGAGTGGATCAATGCTATTCAGATGGATTATGAGGATGAGAATGGAAAGTCCGTGTCGTCCAAGAAGCATGGTGGAGATGGAGGTTCCCCATCAGAGGTTGTTTTCCAATATCCAGACGAACATCTTATTACAGTTGATGGAACCTACGACAACTCACTTGACAGAAAATCTGCTACCAATATGATTCGATCCTTGACTGTGAAAACCAATAAAAACACTTTTGGGCCATATGGGTTTGATTCGTTTGAAGATGGAACCAAATTTTTATTCCCAACTGATGGTCGGTTGAAGGTGGTTGGCATCCATGGCAGATCTGATAAGTATCTCAATGCCATTGGACTCCATGTAGCTCCAGCATTTTAA 1023 42.52 MSVDTNVRSFSSLENDRGSSTTAVKIQVCGSKDGRVWDDGVYSDVRRLVIEHDNKNICSVQIEYIDKNGQSKWHSSSNHGRHDGSIDKVDLDYPNEYLISIHGYYHEDTYKKWIKSLTFESNTRNWGPYGEEKGTKFSFPIMGAKIIGFHGWSGSVLLNAIGVYVQPVIKSMRQVKPEAEPQPLLPLEHYYSLGQYGREDGECWVETFRTIKRLIIYSDGEWINAIQMDYEDENGKSVSSKKHGGDGGSPSEVVFQYPDEHLITVDGTYDNSLDRKSATNMIRSLTVKTNKNTFGPYGFDSFEDGTKFLFPTDGRLKVVGIHGRSDKYLNAIGLHVAPAF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115101613 115103231 + Tan0017185.1 Tan01g4934 742358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4934 340 FunFam Jacalin-related lectin 33 188 339 - -
Tan01g4934 340 SUPERFAMILY Mannose-binding lectins 191 338 IPR036404 -
Tan01g4934 340 SUPERFAMILY Mannose-binding lectins 21 167 IPR036404 -
Tan01g4934 340 SMART Jacalin_2 34 167 IPR001229 -
Tan01g4934 340 SMART Jacalin_2 201 338 IPR001229 -
Tan01g4934 340 Gene3D - 10 165 IPR036404 -
Tan01g4934 340 Gene3D - 187 337 IPR036404 -
Tan01g4934 340 ProSiteProfiles Jacalin-type lectin domain profile. 190 338 IPR001229 -
Tan01g4934 340 ProSiteProfiles Jacalin-type lectin domain profile. 23 167 IPR001229 -
Tan01g4934 340 FunFam Jacalin-related lectin 33 21 168 - -
Tan01g4934 340 CDD Jacalin 211 337 IPR033734 GO:0030246(InterPro)
Tan01g4934 340 Pfam Jacalin-like lectin domain 194 335 IPR001229 -
Tan01g4934 340 Pfam Jacalin-like lectin domain 27 164 IPR001229 -
Tan01g4934 340 PANTHER JACALIN-RELATED LECTIN 3 22 169 - -
Tan01g4934 340 CDD Jacalin 34 166 IPR033734 GO:0030246(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4934 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4931 Tan-Chr1:115062712 Tan01g4934 Tan-Chr1:115101613 1.40E-102 dispersed
Tan01g4932 Tan-Chr1:115062712 Tan01g4934 Tan-Chr1:115101613 2.80E-67 dispersed
Tan01g4934 Tan-Chr1:115101613 Tan11g1716 Tan-Chr11:16984190 3.10E-112 dispersed
Tan01g4933 Tan-Chr1:115071145 Tan01g4934 Tan-Chr1:115101613 1.20E-19 tandem
Tan01g4934 Tan-Chr1:115101613 Tan01g4935 Tan-Chr1:115110422 3.40E-18 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001431 0 9 1 0 0 2 0 2 3 3 0 3 1 3 3 0 3 0 0 3 2 2 2 3 4 5 3 6 9 0 72