Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4949 ATGCCTCTGCCTCTGAGAGGCATAATTCGTGAGCAGTGTGAAATACGAGAAGGCAGTGGGAATTCATCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCACATGTTGTCCCTGAGCAGCCTTCTTCATCTTTTCCGGTTCCGATTGAACAGAGCCATTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGAGAAACCTCTTGGCCTTCTCGTCGGGATGTTGTTGCGTGTGCTTCAGTTTGCAGGTCATGGCGGATGGTTACAAAGGAAGTTGTGAGGACTCCCGAACAGTGTGGGTGGATCACCTTCCCAATTTCTCTGAAGCAGCCGGGACCTAGAGACACCCCAATCCAGTGTTTCATTAAAAGAGAAAGGGCAACTTCAACGTTTCGGCTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCACTGAGTACAGATTTCATTGTATCATTAGTTCCAGAGGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGATAGTCAGCCTCCACATGACGCAAAATTGCGAACCAGTAGATCAAAACGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACCAACTATAAAGTCGCTGCCGTAGCTTATGAGCTCAACGTCCTCCGCACCAGAGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTTAAAGACGACATCAATGAACATCATTCATCTACATCGACTTGCAAAGGAAAAGGAAAGAAGCCGATAACCGAGTCCCCCGAGCCTCAGGAATCGATAGCTGCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTTAATTTCAAAGGGCGCGTCACGGTTGCCTCTGTGAAGAACTTCCAGCTAGTTGCTGCAGCAGAGACGAGTCAAAATGTGTCTGCAGCGGAACAAGAGAGAGTGATTCTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGGTATCCTCTTTCAGCTTTCCAAGCGTTTGCAATTTGCCTTAGTAGCTTTGATACCAAGCCAGCATGTGAATAA 1233 47.28 MPLPLRGIIREQCEIREGSGNSSRKVREGVQMRHLGKSHVVPEQPSSSFPVPIEQSHWANLPPELLLDIIQRVEARETSWPSRRDVVACASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRALSTDFIVSLVPEDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDAKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDDINEHHSSTSTCKGKGKKPITESPEPQESIAALVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115269461 115272775 - Tan0009249.1 Tan01g4949 742373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4949 410 PANTHER TUBBY-RELATED 26 409 - -
Tan01g4949 410 Pfam Tub family 119 405 IPR000007 -
Tan01g4949 410 Gene3D Tubby Protein; Chain A 116 410 IPR025659 -
Tan01g4949 410 Pfam F-box-like 58 100 IPR001810 GO:0005515(InterPro)
Tan01g4949 410 SUPERFAMILY Tubby C-terminal domain-like 107 410 IPR025659 -
Tan01g4949 410 MobiDBLite consensus disorder prediction 283 310 - -
Tan01g4949 410 Gene3D - 53 106 - -
Tan01g4949 410 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Tan01g4949 410 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
Tan01g4949 410 CDD F-box_AtTLP-like 58 102 - -
Tan01g4949 410 ProSitePatterns Tub family signature 2. 395 410 IPR018066 -
Tan01g4949 410 SUPERFAMILY F-box domain 48 101 IPR036047 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4949 K19600 - - csv:101222500 742.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4949 Tan-Chr1:115269461 Tan03g1988 Tan-Chr3:74918437 1.70E-144 dispersed
Tan01g1235 Tan-Chr1:11934285 Tan01g4949 Tan-Chr1:115269461 2.10E-150 wgd
Tan01g4949 Tan-Chr1:115269461 Tan03g1987 Tan-Chr3:74918437 1.70E-144 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g3331 . 1 430 TUB Transcription Factor Family AT1G76900 72.3 9.8e-178 620.5
Tan11g1139 . 1 432 TUB Transcription Factor Family AT1G76900 70.0 2.3e-171 599.4
Tan11g1138 . 1 432 TUB Transcription Factor Family AT1G76900 70.0 2.3e-171 599.4
Tan01g0725 . 1 428 TUB Transcription Factor Family AT1G76900 70.1 4.4e-170 595.1
Tan01g1235 . 1 413 TUB Transcription Factor Family AT1G76900 51.1 4.8e-116 415.6
Tan06g2627 . 13 386 TUB Transcription Factor Family AT1G76900 50.8 9.0e-115 411.4
Tan10g0947 . 13 390 TUB Transcription Factor Family AT1G76900 51.4 2.2e-113 406.8
Tan01g0725 . 174 428 TUB Transcription Factor Family AT1G25280 73.5 4.4e-101 365.2
Tan11g1139 . 175 432 TUB Transcription Factor Family AT1G25280 71.5 6.1e-95 344.7
Tan11g1138 . 175 432 TUB Transcription Factor Family AT1G25280 71.5 6.1e-95 344.7
Tan01g3331 . 173 430 TUB Transcription Factor Family AT1G25280 67.9 6.8e-94 341.3
Tan01g1235 . 177 413 TUB Transcription Factor Family AT1G25280 56.2 1.4e-70 263.8
Tan10g0947 . 154 390 TUB Transcription Factor Family AT1G25280 52.4 1.2e-69 260.8
Tan06g2627 . 154 386 TUB Transcription Factor Family AT1G25280 53.9 9.8e-69 257.7
Tan01g4949 . 181 410 TUB Transcription Factor Family AT1G25280 53.4 5.4e-67 251.9
Tan03g1988 . 176 414 TUB Transcription Factor Family AT1G25280 54.1 2.7e-66 249.6
Tan03g1987 . 176 414 TUB Transcription Factor Family AT1G25280 54.1 2.7e-66 249.6
Tan06g2627 . 98 386 TUB Transcription Factor Family AT5G18680 63.1 1.1e-100 364.0
Tan10g0947 . 98 390 TUB Transcription Factor Family AT5G18680 62.3 1.4e-95 347.1
Tan01g3331 . 112 430 TUB Transcription Factor Family AT5G18680 53.6 1.1e-84 310.8
Tan01g0725 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 3.5e-83 305.8
Tan11g1139 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-82 303.5
Tan11g1138 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.7e-82 303.5
Tan01g1235 . 115 413 TUB Transcription Factor Family AT5G18680 53.0 5.2e-79 292.0
Tan01g4949 . 117 410 TUB Transcription Factor Family AT5G18680 51.2 1.6e-75 280.4
Tan03g1988 . 114 414 TUB Transcription Factor Family AT5G18680 50.7 4.6e-75 278.9
Tan03g1987 . 114 414 TUB Transcription Factor Family AT5G18680 50.7 4.6e-75 278.9
Tan01g0880 . 119 387 TUB Transcription Factor Family AT5G18680 50.7 1.9e-68 256.9
Tan01g1235 . 1 413 TUB Transcription Factor Family AT2G18280 61.6 4.0e-143 505.4
Tan03g1988 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 8.6e-138 487.6
Tan03g1987 . 1 414 TUB Transcription Factor Family AT2G18280 60.6 8.6e-138 487.6
Tan01g4949 . 3 410 TUB Transcription Factor Family AT2G18280 59.0 3.2e-124 442.6
Tan01g0725 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 2.6e-118 422.9
Tan01g3331 . 1 430 TUB Transcription Factor Family AT2G18280 52.3 4.2e-116 415.6
Tan06g2627 . 1 386 TUB Transcription Factor Family AT2G18280 53.6 9.3e-116 414.5
Tan11g1139 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 1.1e-113 407.5
Tan11g1138 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 1.1e-113 407.5
Tan10g0947 . 1 390 TUB Transcription Factor Family AT2G18280 52.9 2.5e-113 406.4
Tan01g0880 . 54 387 TUB Transcription Factor Family AT2G18280 51.3 5.3e-95 345.5
Tan06g2627 . 1 386 TUB Transcription Factor Family AT2G47900 68.7 2.8e-160 562.4
Tan10g0947 . 1 390 TUB Transcription Factor Family AT2G47900 68.7 2.8e-160 562.4
Tan01g3331 . 1 430 TUB Transcription Factor Family AT2G47900 56.6 6.0e-134 474.9
Tan01g0725 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 3.6e-131 465.7
Tan11g1139 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 3.1e-130 462.6
Tan11g1138 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 3.1e-130 462.6
Tan01g1235 . 5 413 TUB Transcription Factor Family AT2G47900 55.2 6.8e-122 434.9
Tan03g1988 . 1 414 TUB Transcription Factor Family AT2G47900 53.1 1.6e-118 423.7
Tan03g1987 . 1 414 TUB Transcription Factor Family AT2G47900 53.1 1.6e-118 423.7
Tan01g4949 . 15 410 TUB Transcription Factor Family AT2G47900 55.4 4.3e-116 415.6
Tan01g0880 . 55 387 TUB Transcription Factor Family AT2G47900 52.9 1.2e-102 370.9
Tan06g0484 . 79 304 TUB Transcription Factor Family AT1G16070 60.0 2.7e-72 269.6
Tan01g3331 . 67 430 TUB Transcription Factor Family AT1G43640 70.2 1.1e-147 520.4
Tan01g0725 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.8e-145 513.1
Tan11g1139 . 65 432 TUB Transcription Factor Family AT1G43640 66.3 5.3e-142 501.5
Tan11g1138 . 65 432 TUB Transcription Factor Family AT1G43640 66.3 5.3e-142 501.5
Tan06g2627 . 47 386 TUB Transcription Factor Family AT1G43640 52.3 1.9e-107 386.7
Tan10g0947 . 49 390 TUB Transcription Factor Family AT1G43640 53.3 2.7e-106 382.9
Tan01g4949 . 36 410 TUB Transcription Factor Family AT1G47270 63.3 3.3e-134 475.7
Tan01g1235 . 34 413 TUB Transcription Factor Family AT1G47270 58.3 7.7e-123 438.0
Tan03g1988 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.7e-122 436.8
Tan03g1987 . 33 414 TUB Transcription Factor Family AT1G47270 58.4 1.7e-122 436.8
Tan01g0725 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 2.0e-115 413.3
Tan01g3331 . 31 430 TUB Transcription Factor Family AT1G47270 52.1 9.4e-113 404.4
Tan11g1139 . 48 432 TUB Transcription Factor Family AT1G47270 53.9 4.7e-112 402.1
Tan11g1138 . 48 432 TUB Transcription Factor Family AT1G47270 53.9 4.7e-112 402.1
Tan06g2627 . 1 386 TUB Transcription Factor Family AT1G47270 51.1 1.5e-110 397.1
Tan10g0947 . 1 390 TUB Transcription Factor Family AT1G47270 50.1 9.5e-105 377.9
Tan01g0880 . 1 387 TUB Transcription Factor Family AT1G53320 71.8 3.9e-156 548.5
Tan01g1235 . 20 413 TUB Transcription Factor Family AT1G53320 51.3 1.0e-103 374.4
Tan06g2627 . 22 386 TUB Transcription Factor Family AT1G53320 50.4 1.5e-102 370.5
Tan10g0947 . 33 390 TUB Transcription Factor Family AT1G53320 51.9 3.4e-99 359.4
Tan10g0947 . 98 390 TUB Transcription Factor Family AT3G06380 64.8 1.4e-97 353.6
Tan06g2627 . 98 386 TUB Transcription Factor Family AT3G06380 63.1 2.0e-96 349.7
Tan01g0725 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 5.8e-83 305.1
Tan01g3331 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 3.7e-82 302.4
Tan11g1139 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 9.2e-81 297.7
Tan11g1138 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 9.2e-81 297.7
Tan01g1235 . 119 413 TUB Transcription Factor Family AT3G06380 53.8 5.1e-79 292.0
Tan01g4949 . 121 410 TUB Transcription Factor Family AT3G06380 50.7 7.3e-78 288.1
Tan03g1988 . 118 414 TUB Transcription Factor Family AT3G06380 52.7 6.8e-76 281.6
Tan03g1987 . 118 414 TUB Transcription Factor Family AT3G06380 52.7 6.8e-76 281.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005909 3 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26607 PF01167 Tub 1.10E-105 CL0395 Tan TF