Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4949 ATGCCTCTGCCTCTGAGAGGCATAATTCGTGAGCAGTGTGAAATACGAGAAGGCAGTGGGAATTCATCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCACATGTTGTCCCTGAGCAGCCTTCTTCATCTTTTCCGGTTCCGATTGAACAGAGCCATTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGAGAAACCTCTTGGCCTTCTCGTCGGGATGTTGTTGCGTGTGCTTCAGTTTGCAGGTCATGGCGGATGGTTACAAAGGAAGTTGTGAGGACTCCCGAACAGTGTGGGTGGATCACCTTCCCAATTTCTCTGAAGCAGCCGGGACCTAGAGACACCCCAATCCAGTGTTTCATTAAAAGAGAAAGGGCAACTTCAACGTTTCGGCTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCACTGAGTACAGATTTCATTGTATCATTAGTTCCAGAGGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGATAGTCAGCCTCCACATGACGCAAAATTGCGAACCAGTAGATCAAAACGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACCAACTATAAAGTCGCTGCCGTAGCTTATGAGCTCAACGTCCTCCGCACCAGAGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTTAAAGACGACATCAATGAACATCATTCATCTACATCGACTTGCAAAGGAAAAGGAAAGAAGCCGATAACCGAGTCCCCCGAGCCTCAGGAATCGATAGCTGCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTTAATTTCAAAGGGCGCGTCACGGTTGCCTCTGTGAAGAACTTCCAGCTAGTTGCTGCAGCAGAGACGAGTCAAAATGTGTCTGCAGCGGAACAAGAGAGAGTGATTCTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGGTATCCTCTTTCAGCTTTCCAAGCGTTTGCAATTTGCCTTAGTAGCTTTGATACCAAGCCAGCATGTGAATAA 1233 47.28 MPLPLRGIIREQCEIREGSGNSSRKVREGVQMRHLGKSHVVPEQPSSSFPVPIEQSHWANLPPELLLDIIQRVEARETSWPSRRDVVACASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRALSTDFIVSLVPEDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDAKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDDINEHHSSTSTCKGKGKKPITESPEPQESIAALVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115269461 115272775 - Tan0009249.1 Tan01g4949 742373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4949 410 PANTHER TUBBY-RELATED 26 409 - -
Tan01g4949 410 Pfam Tub family 119 405 IPR000007 -
Tan01g4949 410 Gene3D Tubby Protein; Chain A 116 410 IPR025659 -
Tan01g4949 410 Pfam F-box-like 58 100 IPR001810 GO:0005515(InterPro)
Tan01g4949 410 SUPERFAMILY Tubby C-terminal domain-like 107 410 IPR025659 -
Tan01g4949 410 MobiDBLite consensus disorder prediction 283 310 - -
Tan01g4949 410 Gene3D - 53 106 - -
Tan01g4949 410 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Tan01g4949 410 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Tan01g4949 410 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
Tan01g4949 410 CDD F-box_AtTLP-like 58 102 - -
Tan01g4949 410 ProSitePatterns Tub family signature 2. 395 410 IPR018066 -
Tan01g4949 410 SUPERFAMILY F-box domain 48 101 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4949 Tan-Chr1:115269461 Tan03g1988 Tan-Chr3:74918437 1.70E-144 dispersed
Tan01g1235 Tan-Chr1:11934285 Tan01g4949 Tan-Chr1:115269461 2.10E-150 wgd
Tan01g4949 Tan-Chr1:115269461 Tan03g1987 Tan-Chr3:74918437 1.70E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26607 PF01167 Tub 1.10E-105 CL0395 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4949 K19600 - csv:101222500 742.265