Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4974 ATGGAGAGAAAACCCATAAACAACAACGTTGCTCAAGCAAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCGGACAACGCTTCTTGCACCTTCAAAGGCGTCCGCCAGCGCACTTGGGGCAAATGGGTCGCTGAGATTCGCGAGCCCAATCGCGGTGCTCGACTCTGGCTCGGCACCTTCGACACCGCCCATGAAGCTGCCGTCGCTTACGACGCTGCTGCTCGTAAGCTCTATGGCTCTGATGCTAAACTCAACCTCCCTCAAACTGCTTCAGAGCCTCAACAATTGCCCACTACTGCCATCTCATCGTCTCCGGTGGTGGAGTCCGACCAAATCGGAGGGCTGTGGGAAACTGAGGATGTGAATTTTGATGAGTCCATATGGAGGGAGGCGGTGATGTCCTTGGATTTTCCTATTGTTGAAGACGATCAAGGGTTTTATTTCGATGAGGTCGGCAATTGGGATACTTTGCACTGGTGCATGTGA 492 54.07 MERKPINNNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQLPTTAISSSPVVESDQIGGLWETEDVNFDESIWREAVMSLDFPIVEDDQGFYFDEVGNWDTLHWCM 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115526265 115526756 + Tan0014128.1 Tan01g4974 742398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4974 163 MobiDBLite consensus disorder prediction 1 26 - -
Tan01g4974 163 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677(InterPro)
Tan01g4974 163 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 106 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Tan01g4974 163 SMART rav1_2 32 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4974 163 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Tan01g4974 163 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4974 163 CDD AP2 31 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4974 163 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4974 163 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4974 163 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g4974 163 Pfam AP2 domain 33 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4974 Tan-Chr1:115526265 Tan11g0296 Tan-Chr11:2356250 9.30E-30 dispersed
Tan03g0754 Tan-Chr3:63470986 Tan01g4974 Tan-Chr1:115526265 2.00E-27 transposed
Tan01g4974 Tan-Chr1:115526265 Tan02g2020 Tan-Chr2:89445874 6.20E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26609 PF00847 AP2 2.00E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4974 - - - 0.0