Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4979 ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAAAACCCAACGAACAGGCAGGTCACTTACTCGAAGCGACGCAACGGCCTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATTATGTTTTCCAGCACTGGCAAACTCCATGAATTCATCAGCCCTGCTACTTCGACCAAGGAGCTGTTCGATCAGTACCAGAAGACTTTAGGCGTTGATCTATGGATCACTCACTATGAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGATGTGAATCGAAATCTCCGGAGGCAGATTAGGCAGAGGATGGGGGAATGTATGAATGATCTGAACTTTGAGGAACTGCGATGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTATCGGGTGATATCAAACCAGATTGAAACGCACAAGAAAAAGTTAAAGAGTGTAGGAGAAATACACAAGAGTCTTCTCCAGGAATTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGAGGAGATTACGAATCAATGATGGGATTCTCAGGCAGTAGCGCTCGCATTTTTGCCCTTCGCCTGCAGCCCAACCACCCTATTCACCACGCTCCACCTTCAGACCTCAATACTTACCCACTGCTCGAGTAG 690 46.81 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEFISPATSTKELFDQYQKTLGVDLWITHYERMQENLKKLKDVNRNLRRQIRQRMGECMNDLNFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGGDYESMMGFSGSSARIFALRLQPNHPIHHAPPSDLNTYPLLE 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115574713 115578782 + Tan0008650.1 Tan01g4979 742403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4979 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g4979 229 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g4979 229 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g4979 229 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g4979 229 FunFam MADS-box transcription factor 16 13 97 - -
Tan01g4979 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g4979 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 166 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g4979 229 Pfam K-box region 82 168 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g4979 229 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan01g4979 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g4979 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g4979 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g4979 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g4979 229 Coils Coil 84 111 - -
Tan01g4979 229 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4063 Tan-Chr1:105569573 Tan01g4979 Tan-Chr1:115574713 5.20E-33 dispersed
Tan01g4979 Tan-Chr1:115574713 Tan06g2137 Tan-Chr6:70791271 9.70E-25 dispersed
Tan01g4979 Tan-Chr1:115574713 Tan05g2334 Tan-Chr5:74774199 1.40E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26612 PF01486 K-box 5.30E-22 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4979 K09264 - csv:101218008 422.935