Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g4979 | ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAAAACCCAACGAACAGGCAGGTCACTTACTCGAAGCGACGCAACGGCCTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATTATGTTTTCCAGCACTGGCAAACTCCATGAATTCATCAGCCCTGCTACTTCGACCAAGGAGCTGTTCGATCAGTACCAGAAGACTTTAGGCGTTGATCTATGGATCACTCACTATGAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGATGTGAATCGAAATCTCCGGAGGCAGATTAGGCAGAGGATGGGGGAATGTATGAATGATCTGAACTTTGAGGAACTGCGATGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTATCGGGTGATATCAAACCAGATTGAAACGCACAAGAAAAAGTTAAAGAGTGTAGGAGAAATACACAAGAGTCTTCTCCAGGAATTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGAGGAGATTACGAATCAATGATGGGATTCTCAGGCAGTAGCGCTCGCATTTTTGCCCTTCGCCTGCAGCCCAACCACCCTATTCACCACGCTCCACCTTCAGACCTCAATACTTACCCACTGCTCGAGTAG | 690 | 46.81 | MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEFISPATSTKELFDQYQKTLGVDLWITHYERMQENLKKLKDVNRNLRRQIRQRMGECMNDLNFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGGDYESMMGFSGSSARIFALRLQPNHPIHHAPPSDLNTYPLLE | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 115574713 | 115578782 | + | Tan0008650.1 | Tan01g4979 | 742403 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g4979 | 229 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g4979 | 229 | ProSiteProfiles | K-box domain profile. | 84 | 174 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Tan01g4979 | 229 | SUPERFAMILY | SRF-like | 3 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g4979 | 229 | Gene3D | - | 13 | 79 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g4979 | 229 | FunFam | MADS-box transcription factor 16 | 13 | 97 | - | - | |
Tan01g4979 | 229 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g4979 | 229 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 166 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Tan01g4979 | 229 | Pfam | K-box region | 82 | 168 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Tan01g4979 | 229 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Tan01g4979 | 229 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g4979 | 229 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g4979 | 229 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g4979 | 229 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Tan01g4979 | 229 | Coils | Coil | 84 | 111 | - | - | |
Tan01g4979 | 229 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4063 | Tan-Chr1:105569573 | Tan01g4979 | Tan-Chr1:115574713 | 5.20E-33 | dispersed | |
Tan01g4979 | Tan-Chr1:115574713 | Tan06g2137 | Tan-Chr6:70791271 | 9.70E-25 | dispersed | |
Tan01g4979 | Tan-Chr1:115574713 | Tan05g2334 | Tan-Chr5:74774199 | 1.40E-23 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26612 | PF01486 | K-box | 5.30E-22 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g4979 | K09264 | - | csv:101218008 | 422.935 |