Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4986 ATGAGTAAGAGGCCACCGCCGGACCCCGTGGCCGTGCTACGAGGTCATCGGGCCTCTGTCACGGACGTTTCTTTTCATCCATCTGAACCTCTTCTCTTTTCGGGCTCTGCAGATGGTGAGTTGCGTATTTGGGACACGGCTCAGCATAGAACGGTATCATCGGCATGGGTGCATAGTGCGGCACACGGAATTATTAGTATTGCTTGTAGTCGTTCTATTGGGACAAATAGAGTTGTCAGCCAGGGTAGGGATGGAACTGTGAAGTGCTGGGATATTGACGATAGGGCTCTGTCCAGAGTTCCATCTGTCACAATCAAGACAAATGCCTATCACTTTTGCAAACTCTCCTTGGTGAAGCAGCCTGTTGAGGTCGAAGCTTTGGGCTGCAGTGGAGAAAAGGCTCAAGGAATTTCTACTGAGCACGCATGCAGATCAGAAGCTGACGGGCTAAAGTATGTGGCTGTTGCGGGGGAGCAATCTTCAGAGGTTGAAATTTGGGATCTGAATGCTGGGGAAAGGTTGCTACGACTTCCTCCAAACTGTGAAGGGGGTTGCCCAAATATCTCTTCTACCAAGGACAGAGGATTGTGCATGGCAGTTCAAGCCTTTTTACCGTCTAAATCTCAGGGATTCTTAAATGTCTTGTCTGGATATGAGGATGGTTCCATGCTTTGGTGGGATCTAAGGAAACCGGGAGTTCCAGTAACATCAGTGAAGTGTCATTCAGAGCCAGTTCTAAGCATTTGCATTGATGGATCTTGCAATGGCGGTATCTCTGGAGCTGCAGATGACAAAATTGTGATGTTTAGTTTGGATCATTCCATGGGGACATGTCTGGTGAAGAAAGAAATTACTTTGGAACGGCCTGGCATAGCAAAGGTCTCTATTCGACATGACGACAAGATTGCTGCAACTGCTGGTTGGGATCACAGAGTTCGTATATATAATTATCGGAAAGGAAGTCCTCTTGCAATATTGAAGTATCATCAGGCCTTGTGTAATACTGTATCATATTCGGACAACTGTAAGTTAATGGCATCTGCATCAGAAGACAGAACAGTGGCACTCTGGGAACTCTATCCTCCTCGAACTTGA 1095 46.94 MSKRPPPDPVAVLRGHRASVTDVSFHPSEPLLFSGSADGELRIWDTAQHRTVSSAWVHSAAHGIISIACSRSIGTNRVVSQGRDGTVKCWDIDDRALSRVPSVTIKTNAYHFCKLSLVKQPVEVEALGCSGEKAQGISTEHACRSEADGLKYVAVAGEQSSEVEIWDLNAGERLLRLPPNCEGGCPNISSTKDRGLCMAVQAFLPSKSQGFLNVLSGYEDGSMLWWDLRKPGVPVTSVKCHSEPVLSICIDGSCNGGISGAADDKIVMFSLDHSMGTCLVKKEITLERPGIAKVSIRHDDKIAATAGWDHRVRIYNYRKGSPLAILKYHQALCNTVSYSDNCKLMASASEDRTVALWELYPPRT 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115631409 115636012 + Tan0017990.1 Tan01g4986 742410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4986 364 Gene3D - 129 362 IPR015943 GO:0005515(InterPro)
Tan01g4986 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 364 - -
Tan01g4986 364 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Tan01g4986 364 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Tan01g4986 364 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Tan01g4986 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 364 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Tan01g4986 364 Gene3D - 4 115 IPR015943 GO:0005515(InterPro)
Tan01g4986 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Tan01g4986 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 SMART WD40_4 6 45 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 SMART WD40_4 48 91 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 SMART WD40_4 231 270 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 SMART WD40_4 277 316 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 SMART WD40_4 319 358 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 PANTHER TRANSDUCIN BETA-LIKE 3 4 359 - -
Tan01g4986 364 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 Pfam WD domain, G-beta repeat 320 357 IPR001680 GO:0005515(InterPro)
Tan01g4986 364 SUPERFAMILY WD40 repeat-like 4 358 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4986 K24770 - - csv:101213197 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4986 Tan-Chr1:115631409 Tan02g0406 Tan-Chr2:3501901 3.80E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1053 . . . . . . . . . . Cma01g01949 . Car01g01523 . . . . . . . . . . . . . . . . . . . Cone7ag1864 . . Lsi04g01719 . . . . . . . . . . . Sed01g2508 Cmo01g02010 . . . . . . Cpe02g00090 Bhi09g02120 Tan01g4986 Cmetu02g1305 . Hepe01g1640 Mch11g0142 . Cla05g01896 Cam05g2032 Cec05g2041 Cco05g2097 Clacu05g2024 Cmu05g1904 Cre05g2027 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012184 2 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 29