Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4990 ATGTGTTTTATGGAGTCTTCAACTCTGATCCTGCATTGCAGTGATGTGGTTATTGACGTTTTGAATGTTAATGTTGGCGTAGCATCGTGTCATTGTGTCGCATTGGACGTGGAAGGGCGCTGCTATACCTGGGGACGCAATGAGAAAGGTCAATTGGGTCATGGAGATTTGATTCAGCGAGATAGGCCTACTATAGTATCTGACCTTTCGAAGTACAAGGTGGTTAAAGCTGGAGCAGGGAGAAACCACACGGTTGTGGTTACTGAGGACGGAAATTCTCTATCTTTTGGTTGGAACAAACATGGCCAGTTGGGTTCAGGTTCAGTGAAAAATGAGATTGAGTCATCTCCTGTACGTTGTCTCGTATCTGAAGTGAAAAATACTGCTTGTGGGGGTGAATTCACTGTGTGGTTATCCTCTATTGAAGGAGCTTCCATACTTACTGCAGGTCTTCCACAGTATGGACAGCTTGGTCATGGAACAGATAATGAGTACAACACAAAGGATAGCTCAGTAAGACTTGCTTATGAAGCCCAACCACGCCCCAGAGCAATTGCTTCCCTTGCTGGAGAAAAAATTGTTAAGGTTGCTTGTGGAACAAATCATACAGTGGCTGTGGATTCTAATGGCTTTGTCTACACGTGGGGTTTTGGCGGTTATGGAAGACTCGGGCATAGAGAGCAGAAGGATGAATGGGTCCCTCGACGCGTTGATGTATTCCAGAGGAAAAATACTCTGCCTCCCGATGCTATCGTTTCAGCGGGGTCTGTTAACTCTTCTTGTACTGCAGGTGGAGGGCAGCTATATATGTGGGGGAAAATAAAAAACGCAGGAGATGACTGGATGTATCCCAAACCTCTCATGGATTTAAGTGGATGGAATATAAGATGCATGGATTCGGGCAACATGCACCATTTTGTGGGTGCCGATAACTCATGCATAAGTTGGGGTCATGCACAATATGGAGAGCTGGGATATGGCCCAATGGGGCAGAAGTCTTCTGCTGTACCCAAGAAAGTTGATATCCTGGAGAACATGCATGTCATCAGTGTTGCATGTGGTGCTGGACACTCCATGGTTATTGTTGATAGAGCAAATGTGGCCGACCGACTTGATCAGCTTGATATACACGATGGCAAAGCTTTTGATGAAGAGAATGCAGTATCAAATGCGGTACCACAGAGTAAGGGTTCGGCTGTCAAGCAAACTCCAAAGGCTGCTAAAGCGTCACAGAATGCCAAGAAGAGGAAGAAAGCTAAAGATTCATCCGACTCAGAGGAGGAAGGAGAGGAAAATGAAGATGGCAACAGCAGTGATGAAGAAGAGGCAAATGGGCTGTCAGATACGAGTGAACAATATGGGAGCAAAAGTAAGGGTAGAGGTAGAGGAAAGGGTGGTAAAGACTCATCTGGCGGCGGAAAGGGCAGTGGTCGTGGACGGGGTCGGCCCCCATCGAACAAGAAATCAGCGCCTTCTCAAGGAAAAGCAGCAGCAGGTAAGAGAGGTAGACCCCGAAAGACATGA 1524 46.72 MCFMESSTLILHCSDVVIDVLNVNVGVASCHCVALDVEGRCYTWGRNEKGQLGHGDLIQRDRPTIVSDLSKYKVVKAGAGRNHTVVVTEDGNSLSFGWNKHGQLGSGSVKNEIESSPVRCLVSEVKNTACGGEFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIASLAGEKIVKVACGTNHTVAVDSNGFVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRKNTLPPDAIVSAGSVNSSCTAGGGQLYMWGKIKNAGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADNSCISWGHAQYGELGYGPMGQKSSAVPKKVDILENMHVISVACGAGHSMVIVDRANVADRLDQLDIHDGKAFDEENAVSNAVPQSKGSAVKQTPKAAKASQNAKKRKKAKDSSDSEEEGEENEDGNSSDEEEANGLSDTSEQYGSKSKGRGRGKGGKDSSGGGKGSGRGRGRPPSNKKSAPSQGKAAAGKRGRPRKT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115663581 115670053 + Tan0018581.2 Tan01g4990 742414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4990 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 91 141 IPR000408 -
Tan01g4990 507 MobiDBLite consensus disorder prediction 385 507 - -
Tan01g4990 507 Pfam Regulator of chromosome condensation (RCC1) repeat 90 136 IPR000408 -
Tan01g4990 507 Pfam Regulator of chromosome condensation (RCC1) repeat 38 87 IPR000408 -
Tan01g4990 507 Pfam Regulator of chromosome condensation (RCC1) repeat 147 206 IPR000408 -
Tan01g4990 507 Pfam Regulator of chromosome condensation (RCC1) repeat 312 361 IPR000408 -
Tan01g4990 507 Pfam Regulator of chromosome condensation (RCC1) repeat 209 243 IPR000408 -
Tan01g4990 507 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 351 361 IPR000408 -
Tan01g4990 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 364 IPR000408 -
Tan01g4990 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 39 90 IPR000408 -
Tan01g4990 507 MobiDBLite consensus disorder prediction 388 409 - -
Tan01g4990 507 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 196 206 IPR000408 -
Tan01g4990 507 MobiDBLite consensus disorder prediction 426 446 - -
Tan01g4990 507 Gene3D - 8 170 IPR009091 -
Tan01g4990 507 SUPERFAMILY RCC1/BLIP-II 25 364 IPR009091 -
Tan01g4990 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 210 265 IPR000408 -
Tan01g4990 507 Gene3D - 171 374 IPR009091 -
Tan01g4990 507 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 144 209 IPR000408 -
Tan01g4990 507 PANTHER PROTEIN RCC2 17 506 IPR028641 GO:0016020(PANTHER)|GO:0031267(PANTHER)|GO:0034260(PANTHER)
Tan01g4990 507 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 77 87 IPR000408 -
Tan01g4990 507 PRINTS Chromosome condensation regulator RCC1 signature 40 56 IPR000408 -
Tan01g4990 507 PRINTS Chromosome condensation regulator RCC1 signature 93 109 IPR000408 -
Tan01g4990 507 PRINTS Chromosome condensation regulator RCC1 signature 212 226 IPR000408 -
Tan01g4990 507 PRINTS Chromosome condensation regulator RCC1 signature 196 212 IPR000408 -
Tan01g4990 507 PRINTS Chromosome condensation regulator RCC1 signature 74 87 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4990 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4990 Tan-Chr1:115663581 Tan03g0925 Tan-Chr3:65573974 5.50E-20 dispersed
Tan01g4989 Tan-Chr1:115663581 Tan01g4990 Tan-Chr1:115663581 2.30E-250 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1063 . . Bda01g00500 . Bpe02g00362 . . Bma01g02357 . . Cma01g01953 . Car01g01525 . . . . . . . . . . . . . . . . . . . . Cone17ag1389 Cone20ag0092 Lsi04g01721 Csa03g04257 Chy04g00438 . . . . . . . . . . Cmo01g02012 . . . . . . Cpe02g00088 Bhi09g02117 Tan01g4990 . . Hepe01g1636 Mch11g0139 . . . . . . . . . . . Cme04g00492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32