Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4996 ATGGGCTCTGTGGAAGAGAAGCACAAGACAACAGGGGGTTTGATTAATAATGCCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCACGCTTGTGCTGGTCCGCTCGTTTCCTTGCCCCATGTTGGGAGTCTGGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACGGCAACCTCGCAGATTCCAAATTATCCCAATCTTCCCTCTCAGTTGATGTGTCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTATGCACAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCCTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAACGAGTTCTTCTGCAAAACTTTGACCGCCAGTGACACCAGCACACATGGTGGATTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCACCAACTCAGGAGCTTGTTGTCCGAGACTTGCATGACAATACCTGGACTTTTCGCCACATATATCGTGGGCAGCCAAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGTGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGCTGCTCATCGGAGTGAGGCGTGCTAACAGGCAACAAACAACATTGCCATCATCGGTTCTATCTGCTGATAGTATGCATATAGGGGTTCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGAGTCCATTCACAATCTTCTACAACCCGAGGGCATGCCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATATATGGGTACAATTGTTGGAATTAGCGATTTAGATCCACTGAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTGGAATGGGACGAGCCAGGGTGTTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATCGAAACTCCAGAAAGTCTCTTCATTTTTCCTTCTTTGACTTCGGGTCTTAAACGTCCATTACCCGGTGGATTCTTGGGAGAAACTGATTGGGGAAGTCTGGTTAAGAGACCGATGCTTCGTGTTCCTGAAAATGTACGTGGGGATCTTTCATATGCGCCAACTTTATGCTCCGAACCACTGATGAAGATGCTACTGAGGCCTCAACTGGTTAACCTTCACGGTGCCACCTTACAGCAGGATTCAGCTAACAATTTAGTTAAGTTACAGGACATGAAGGGCATGCAGCCAGTATCCAATCCCAAAATGCAGCAGCTTACATCGTCAGAAACTGCATCTCCTCAGACTCAAAATCATCATCATCCACCACCTACGCCATCTGATCCCATAAGCTCAAATTCATCTCCAAAAGGAAATCTACCAGGAAAAGTACAGCCTTCCGCGGCCATTGAAAGTGAAGCTCCAACTGAATCTGATGTAGACAAGGCGAAATATGAACGCGATCTTTCAACCAATCAGTCTAATCCATTGCCCCCGGTTGGAGATTGTGGGGATGAAAAACTCACTGGTAACGAAGTGAATATGCAGACCCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATCCCCATGCAGTTGCAATCCGTATCGTGGCCCATGCAGTCTCAGCTGGAGTCACTAATCCAACATCCACAGCCAATTGACATGCCTCAGCCTGAATTTCCCAATTCAAATGGTTTGATTTCGTCCCTTGACGGCGATGGATGTTTGATTAACACAACCTGTCTACCCCTTGCTGGAGTAATGAGATCACCTGCGAATTTCTCTATGTTGGGATTGCAAGACTCCTCAACAGTTTTTCCTGAGGCTCTTAATTTTCCTTTGCCCGCTACAGGCCAAGACATGTGGGATCCTCTTAATAATCTAAGGTTCTCATCTCAAACCAATCATCTCGTCTCATTCTCCCATCCAGACGCCTCTAACCTGAACTGTATGGCTAATGCAAATGTTATGAGAGATGTTTCAGATGAGAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACCTTGAAATCAGTAACGGTGCAAGTACTTTGGTTGATCCTGCTGTTTCAAGCACGATTCTTGATGATTATTGCACATTGAAAGATGCCGATTTCCCACACCCTTCGGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATCACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTTCCATGATAATTCAGGTGGCACATCCTCATGCAATTTGGATTTTGATGAGGGCAGTCTTCTGCAGAATGGCTCATGGAAGCAAGTGGTACCGCCCATGAGAACTTACACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACGAGTTTTAAGAACTACGACGAACTATGCTCTGCGATCGAATGTATGTTTGGACTTGAAGGGTTGCTTAATGACCCAAGAGGCTCTGGATGGAAACTGGTTTATGTGGATTATGAAAACGACGTCCTGCTTATTGGTGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGCATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATTAATTGCTCCATGTCAGAAGGTGGCCGAGCCTAA 2850 46.14 MGSVEEKHKTTGGLINNAPQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLPGGFLGETDWGSLVKRPMLRVPENVRGDLSYAPTLCSEPLMKMLLRPQLVNLHGATLQQDSANNLVKLQDMKGMQPVSNPKMQQLTSSETASPQTQNHHHPPPTPSDPISSNSSPKGNLPGKVQPSAAIESEAPTESDVDKAKYERDLSTNQSNPLPPVGDCGDEKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSWPMQSQLESLIQHPQPIDMPQPEFPNSNGLISSLDGDGCLINTTCLPLAGVMRSPANFSMLGLQDSSTVFPEALNFPLPATGQDMWDPLNNLRFSSQTNHLVSFSHPDASNLNCMANANVMRDVSDESNNQSGIYSCSNLEISNGASTLVDPAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNLDFDEGSLLQNGSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSMSEGGRA 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115689728 115695609 - Tan0022033.1 Tan01g4996 742420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4996 949 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Tan01g4996 949 ProSiteProfiles PB1 domain profile. 835 919 IPR053793 -
Tan01g4996 949 FunFam Auxin response factor 313 385 - -
Tan01g4996 949 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 927 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan01g4996 949 MobiDBLite consensus disorder prediction 474 495 - -
Tan01g4996 949 FunFam Auxin response factor 831 924 - -
Tan01g4996 949 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Tan01g4996 949 Gene3D - 147 250 IPR015300 -
Tan01g4996 949 FunFam Auxin response factor 147 251 - -
Tan01g4996 949 Gene3D - 313 385 - -
Tan01g4996 949 Gene3D - 832 924 - -
Tan01g4996 949 MobiDBLite consensus disorder prediction 473 539 - -
Tan01g4996 949 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan01g4996 949 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Tan01g4996 949 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
Tan01g4996 949 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
Tan01g4996 949 Pfam AUX/IAA family 880 923 IPR033389 -
Tan01g4996 949 SUPERFAMILY CAD & PB1 domains 833 914 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4996 Tan-Chr1:115689728 Tan05g2676 Tan-Chr5:78180676 1.00E-173 dispersed
Tan01g4996 Tan-Chr1:115689728 Tan03g2736 Tan-Chr3:80297074 1.00E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26614 PF02309 AUX_IAA 8.80E-10 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4996 K14486 - csv:101216825 1800.02