Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g4998 ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGGCACATTGTCAGGCTCCGTCAAATGCTCCGGCGGTGGCGCAACAAGGCCCGAATGTCCGCCAATCGCATCCCCTCCGACGTTCCCGCCGGACACGTGGCCGTCTGCGTAGGAACCAGCTGCCGGCGTTTCGTCGTCCGGGCAACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTCCAAGCGGAAGAGGAGTACGGGTTCACCAATCAGGGTCCCTTGGCAATCCCTTGTGACGAGTCGGTTTTCGAAGAAGTGATCCGGTTCATCTCCAGATCCGAGTCGCCCAACTCGGGGCGGTTCATGAAATTGGACGATTTTCAGAGTTACTGCCACATCGGAATCAGAACCGGGCTCGATTTATGGCCGGAATCTCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATCTGCTCCGGAGAATGCTTATGGAGATGGCAAAACTGGTGGAGGGATCATTCCACCGTGGTCGTCCCGAGCCCGAATCGGAGTCGGAAAGGAAGAAAACAGCTACAACCACAGAAAGTGTTGCTAATTCGGTTAGAGGGCTACTTCTTGTAA 597 55.11 MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFMKLDDFQSYCHIGIRTGLDLWPESRPLLHGLAEKSICSGECLWRWQNWWRDHSTVVVPSPNRSRKGRKQLQPQKVLLIRLEGYFL 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115725605 115726545 + Tan0000420.1 Tan01g4998 742422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g4998 198 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 101 IPR003676 GO:0009733(InterPro)
Tan01g4998 198 Pfam Auxin responsive protein 16 102 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4998 Tan-Chr1:115725605 Tan02g0737 Tan-Chr2:6895292 1.10E-51 dispersed
Tan01g3762 Tan-Chr1:102422479 Tan01g4998 Tan-Chr1:115725605 2.40E-17 transposed
Tan01g4998 Tan-Chr1:115725605 Tan05g1225 Tan-Chr5:12188271 1.00E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g4998 K14488 - csv:101216342 301.982