Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5010 ATGGCACTCTTAACTAATTCCTCAGCAGACCCCTCTGATCAAAAGAAACCCCTCCACAATAAGCGCAGAAAGAAGCACCAAAACCAAGCTCCGTCGCATCCACCGCCGCCCTCCGCCCAATCTTCATGGGACCAAATCAAGAACCTCATCACCTGCAAACAGGTCGAGGTTACGAGAGTTCACGAGCCGGCAAAACGTTCGCCGGCGTATTCGAAGTTGGGTTCTTCTTGCAGCTCCATTTGTAGTTTCAGAGATGTGGTTCATGGCAATGCCAAAGTTGTACACAGAGCCGACAACTCACCGGAAAGCAGCTCCGTCGGACAGGAAACTAGGCTACTCAGTAGAAAAACTGCAAACGGTTCGTCGTCTCGTTCTTTGACGGCACCGGCGCCGGCCTCGTCCAGAACCAAAAACGGTGCGTCGACTGCCTCATACTCCTCCTCTTCTAGAGGAATACAATTACGAAAGCTTTCTGGGTGTTATGAATGCCACGCCATCGTTGACCCTAGCAGGTACCCAATTCCGAGGAGTTCTATTTGTCCTTGTCCTCAGTGTGGAGAGGTCTTCCGCAAGATTGAAACCTTAGAGCTTCACCAAGCAGTTCGCCATGCTGTTTCGGAGTTGGGTCCTGACGATTCGGGTCGAAACATCGTCGAGATCATTTTCAAATCAAGCTGGCTGAAAAAGGACCGTCCGATTTGCAAGATCGAACGGATACTAAAAGTCCACAATACCCAACGCACCATCCAACGGTTCGAGGACTGCCGCGATGCAGTGAAGACACGCGCCCTCGGCAGCACCAGAAAAAACCCGCGGTGTGCGGCTGACGGCAATGAGCTGTTGCGGTTCCACTGTAGCGCGTTGTGGTGCGATCTCGGCTCACGTGGCTCGACCGGCTTGTGCGGCTCGGTTCCCGGCTGCGGTGTTTGCGGCGTCATTCGCCACGGATTCCAGTGCAAGCCCGGTGGGTCCGCCGGGGTACGGACCACCGCCAGCAGCGGTAGGGCCCACGATTCATTCGAATGCGGCGATGGGCGTCGGCGGGCGATGTTGGTGTGCCGTGTCATCGCCGGCAGGGTGAAGCGGATCGCGGAGGATACGGCGGCGGCGGAGGAGGAGAATTTGTCGGCGGCGGTCTCATACGACTCCGTTTCGCGACACTCCGGGATGTACTCGAATCTCGAGGAGTTGATCATTTTCAATCCGAAGGCTATCCTTCCTTGTTTCGTCGTCATTTACGAAGCGCTCCAAACCTAA 1257 55.29 MALLTNSSADPSDQKKPLHNKRRKKHQNQAPSHPPPPSAQSSWDQIKNLITCKQVEVTRVHEPAKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLSRKTANGSSSRSLTAPAPASSRTKNGASTASYSSSSRGIQLRKLSGCYECHAIVDPSRYPIPRSSICPCPQCGEVFRKIETLELHQAVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALWCDLGSRGSTGLCGSVPGCGVCGVIRHGFQCKPGGSAGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRIAEDTAAAEEENLSAAVSYDSVSRHSGMYSNLEELIIFNPKAILPCFVVIYEALQT 418
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 115817642 115820425 + Tan0018612.1 Tan01g5010 742434
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5010 418 Gene3D - 197 416 - -
Tan01g5010 418 MobiDBLite consensus disorder prediction 1 42 - -
Tan01g5010 418 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 41 413 - -
Tan01g5010 418 SUPERFAMILY ADP-ribosylation 205 414 - -
Tan01g5010 418 FunFam C2H2-like zinc finger protein 204 414 - -
Tan01g5010 418 ProSitePatterns Zinc finger C2H2 type domain signature. 180 203 IPR013087 -
Tan01g5010 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 208 IPR013087 -
Tan01g5010 418 MobiDBLite consensus disorder prediction 94 146 - -
Tan01g5010 418 MobiDBLite consensus disorder prediction 97 146 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5010 Tan-Chr1:115817642 Tan11g1315 Tan-Chr11:11348893 2.30E-88 dispersed
Tan01g5010 Tan-Chr1:115817642 Tan01g1625 Tan-Chr1:16475212 9.00E-53 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26615 None None None None Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5010 - - - 0.0