Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5029 ATGGCTGGTGAATATAGGTTCGCAATGGACCAAAAGGACATTGTGAGGTTATTGGTTGCTGCCATTGATGATTTCACTCGATGTCGTTTGATCAATAAAGAGCAGAGAAACACACATAAAGAGCAGTGTGCCGAGAGACTGGCAGCTGAAGATGGAAGCAGCGACAAAGATACGGAGGTAAGGTACTCTGATCAAGCAGTGCTGGCGAATTTGGATTGGGGTATTGAAGCCCTTGAAGAGGCTCTCAACACATCCAATACAGAAACTAAGCTTGCACGACTTGACCATGCGGAGAAGATGCTTCAAGTGTGTGCCTTATTGAACTCTAACGAGAAAACCGCTGGAGTTCCCAATTTCTACCTTTCTGCTTGGGCTCACCTAAATCTTTCATATCTCGGGAAATTGCGAGGAAATGTTCACAACTCAGTCCTTCATATTCTTGAGATGTTTATTGTGGATCCCTTCTTCTCACGCATTGATTTTGCTCCTGAACTCTGGAAAGAACTCTTTCTCCCACACATGAGCTCAATCGTTGGGTGGTATTCAGAGGAGAGGCACAGGCTTGTGATCGAAGTGATTCCTGATTCTACTGATTTATCATTCACCGCTGATTTAGATCAATTCTTCAACGAATCTTTGATATTTTCGCTGAGGCCTGATCAAATAGAGAAATTACAGAAGTTGGAGCAGGTTTATGGAGAATCTTTGGACGAGAATACGAGGCTCTTTGCTAAATACTTCAAGGATTGTATGAATTCTGATTCAAGCTCTACCAAGAAGGTTGCCCCGATGTTGCCAATCGCGGAGCCGCCTATGACTCCTCTTCGTGAAGTGAGCCGCTCAATTCCCGATTACGTAAAATTTGGACCTATTTTACCCAAGAGTGCCGGGTTTTCGTCCATCATACCAAAATCTAAAGATAGTGCAACAGAAGCAAGCAGGCCAAACGGGACTTCCAGTCCAGCCAACAACACGGAGAAATTTGCAGGGTGGCAAGCTCAGACTGATTCGCTAGAGGAGAATGAAGACGATTATGATCATGAACCTTATGATTCTTACGATCTCAGCGATACTGCAACTCATAAGTTACTATCACCCAGTAGCACGAGGGCGTCGGAGGATGAGCAAATAGGACCAAAAGAAGGGATGCTGAAAATGGGGAGTCGCAAACATTCTCCCACCATTTTTTCTCCAATTGCATCTCCTCCAATCCCTTCACCTAAAGTATTATCTCCAACAGCGAATGAGAAACGTAAAAGTGAATCTCGCTCTGCATTGCGACTGTTATCTAGCCGCTTCGGCGATCAACTTGTTGCTACCTCTGTCCCTAGATCACCAGCTACAAGAAGTGATTACAGCTTCAGTTCGTTAGAGTCTGATGGTGAAGACTTGAAGAAAACCCGCAACAGGAGAAGTTATAAACAAACGCACAATGCAACATATGACAACGTGAGTAGCCAAGACTTCGAGAATTGTTCAATAGATGAACTTGAGGAGGAGAGCAGAAGTCGGTCGTCCGAGAATCTGACACATACAGTACGACCCCCTAAAGATTTCGTATGCCCCATAACAGGTCAGATTTTCAGTGACCCTGTTACTCTCGAAACTGGGCAGACTTATGAAAGAAAAGCGATTCAGGAATGGTTGAAAAGAGGAAATACAACTTGCCCCATTACGCGGCAGCCATTATCTTCAACTGTAATGCCTAAAACGAACTATGTCTTGAAAAGACTGATAACGTCTTGGCAAGAACAGCATCCTGATCTTGCTCAGGATTGTTCGTGGACTGGTACATCAGTAAGTACTGTCCGTTCTACCTTAAAAAAGACGAGCTCTCCGGCATCTACTCCTTGCCGAACATTCCACGTTCCTCTTAATAGTACGTACGAGTCTCTTAACAAAAAAGGCAAAAGATTAATGCAAGCAGCAGTGTCTTCATCGCCGACCAGTGTAATATCTCAAGCCACAGTCGAGAAAATCACTAACATTTTAAAACCTTTGGTCTCTTGTCTTTGTAATTTCGAAAGCTTGAAACAACGTGAGACAGCTGTGCTCTCTATAGCAGGATTCTGGAAGGACTCAAAAGGTGATCCAGCAGTTCATGCTTATTTATCCGAATTGGCTGTTGTAAACGGCTTTGTGGAAATACTGTTAAATTCCCAGGAAAGAGAAGTCTTGAGAACGTCGATTTACATTCTTTCGGAGCTTATTTGTGTGGATGAAAGTGTTGGAGAGTCCCTTAGTAGTCTAGATTCCGATTTTGATTGCCTAGCTTCTTTACTGACGAGTGGGTTGGCAGAGGCGTCTGTTCTTATGTGCCTGCTAAGGCCTACATTTACTCAGTTGTCAGTTCATGACCTTATACCTTCCCTAGTCCAGCTGCTCCAGAAGAAAAATGAAGATTTTGATGATCTTCCGTTTTTAATAGAGCCAAAAGATGCTGCTATCGCAATGCTTGAACAGATTTTTATGGGAGGGGATGAAAATAGCCAGTCCCAGAATGCTGAAAGTCTTACCTCTGCTGGAGGGATCCCTGCATTGGTCAAGTTTTTGTATGGGATAGACGTGAGGAGGCCAATACTTTCCATACTCTTATGTTGTATGCGCGTCGACAAAGGTTGCAAGGACTCCATAGTAGAGGAGATTGAGCTTGCTCCAGTGCTCCAGTTATTTCATGCTGGAAATGAAGACGTGAGAGGCCTGTGTGTGGCCTTTCTATCAGAGCTGGTTCAGATGAACAGGAGGACAAAATGCAATCAAATTTTGCAGACAATTAAAGATGAAGGAGCTTTCAGTTCTATGCATACACTTCTTATATATCTTCAAATGGCTCCAATTGAGCAACAACCGGACATTGCTTCTCTTCTTCTGCAGCTGGATCTCCTGGTTGAACCACGAAAAATGAGCATTTACAGAGAAGAATCTATAGATGCATTGCTTGAAGCCTTTCGAAGAAAGAACTATAATTCTCAAATTGCAGCTGCAGAAGCTTTATTATATCTATCTGGGCGATTGACTTCCTCAGGAAAACCCTATACAAAAGCCTGGTTGCTCAAACTTGCAGGATTTGATCAATCTTACAAGGCTTTAATGAAGGCCGAGGGACTGAGGAAGCCTGACAGCGAATTATCTGAGACAGAGGAGGAAGAGAAGGCAGTCAGCGCATGGGAGAAAAGGGTAGCACTTGTTCTTTGTAACCATGAAAAGGGGTACATTTTTAAAGTTCTGAAGGAATGCCTAAAGAGCAAATCCTTAGAGATGGCAAAGTCCTGTCTTGTCATTATTTCATGGCTCTGCCACATGCTTTCGACGCTCCCAGATACCGGGTTACGAGAGACTGCTCGCAGGTCCTTGCTTGATGAACTTGTCAACGTTCTCCAATCTTCTAATAGCCTGGAGGAGAAGATTTTGGCATGCCTTGCCTTGAAAACTTTCATTAGTGATCCAGCTGCACTTGAGGAACTGGGACTTTATGCAAGATCCATCAACAAAACGTTGAGAAAACTCAGGAGAAACTCATTGGTGGTCAATGATCTAATGAAAGCCTTGATGAACTTGCCATCTGTTGACGCAACAGAGCTCTGGAGTTACAATGAAGTTGGTGCACTAGATTCCAGTTCAAATGGAGAGGTTTTATCCCTGGTTCATCTGAATGGGCGGGTTTTAAGCAGTCACTCGGATGGAACCATTAAGGTCTGGGATGCTGGAAATGATGTATTAACGTTGATCCAAGATGTTCGCAAGCACACAAAAGCTGTAACATGTCTCTGTGTTTCACCTTCCCGCGACACATTATACAGTGGTTCCTTAGACAAAACAATTCGGGTAGACTCTTTTTTTTATCATCTTATGCCAATTAAGTAA 3864 43.48 MAGEYRFAMDQKDIVRLLVAAIDDFTRCRLINKEQRNTHKEQCAERLAAEDGSSDKDTEVRYSDQAVLANLDWGIEALEEALNTSNTETKLARLDHAEKMLQVCALLNSNEKTAGVPNFYLSAWAHLNLSYLGKLRGNVHNSVLHILEMFIVDPFFSRIDFAPELWKELFLPHMSSIVGWYSEERHRLVIEVIPDSTDLSFTADLDQFFNESLIFSLRPDQIEKLQKLEQVYGESLDENTRLFAKYFKDCMNSDSSSTKKVAPMLPIAEPPMTPLREVSRSIPDYVKFGPILPKSAGFSSIIPKSKDSATEASRPNGTSSPANNTEKFAGWQAQTDSLEENEDDYDHEPYDSYDLSDTATHKLLSPSSTRASEDEQIGPKEGMLKMGSRKHSPTIFSPIASPPIPSPKVLSPTANEKRKSESRSALRLLSSRFGDQLVATSVPRSPATRSDYSFSSLESDGEDLKKTRNRRSYKQTHNATYDNVSSQDFENCSIDELEEESRSRSSENLTHTVRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSTVMPKTNYVLKRLITSWQEQHPDLAQDCSWTGTSVSTVRSTLKKTSSPASTPCRTFHVPLNSTYESLNKKGKRLMQAAVSSSPTSVISQATVEKITNILKPLVSCLCNFESLKQRETAVLSIAGFWKDSKGDPAVHAYLSELAVVNGFVEILLNSQEREVLRTSIYILSELICVDESVGESLSSLDSDFDCLASLLTSGLAEASVLMCLLRPTFTQLSVHDLIPSLVQLLQKKNEDFDDLPFLIEPKDAAIAMLEQIFMGGDENSQSQNAESLTSAGGIPALVKFLYGIDVRRPILSILLCCMRVDKGCKDSIVEEIELAPVLQLFHAGNEDVRGLCVAFLSELVQMNRRTKCNQILQTIKDEGAFSSMHTLLIYLQMAPIEQQPDIASLLLQLDLLVEPRKMSIYREESIDALLEAFRRKNYNSQIAAAEALLYLSGRLTSSGKPYTKAWLLKLAGFDQSYKALMKAEGLRKPDSELSETEEEEKAVSAWEKRVALVLCNHEKGYIFKVLKECLKSKSLEMAKSCLVIISWLCHMLSTLPDTGLRETARRSLLDELVNVLQSSNSLEEKILACLALKTFISDPAALEELGLYARSINKTLRKLRRNSLVVNDLMKALMNLPSVDATELWSYNEVGALDSSSNGEVLSLVHLNGRVLSSHSDGTIKVWDAGNDVLTLIQDVRKHTKAVTCLCVSPSRDTLYSGSLDKTIRVDSFFYHLMPIK 1287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115895073 115901053 - Tan0011794.6 Tan01g5029 742453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5029 1287 Gene3D - 643 959 IPR011989 -
Tan01g5029 1287 Pfam U-box domain 516 586 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g5029 1287 SUPERFAMILY ARM repeat 820 1164 IPR016024 -
Tan01g5029 1287 MobiDBLite consensus disorder prediction 440 480 - -
Tan01g5029 1287 CDD RING-Ubox_PUB 516 568 IPR045210 -
Tan01g5029 1287 MobiDBLite consensus disorder prediction 301 328 - -
Tan01g5029 1287 MobiDBLite consensus disorder prediction 340 423 - -
Tan01g5029 1287 ProSiteProfiles Trp-Asp (WD) repeats profile. 1246 1276 IPR001680 GO:0005515(InterPro)
Tan01g5029 1287 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1276 IPR052858 -
Tan01g5029 1287 SMART Ubox_2 518 582 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g5029 1287 SMART WD40_4 1196 1234 IPR001680 GO:0005515(InterPro)
Tan01g5029 1287 SMART WD40_4 1239 1278 IPR001680 GO:0005515(InterPro)
Tan01g5029 1287 MobiDBLite consensus disorder prediction 358 373 - -
Tan01g5029 1287 SUPERFAMILY WD40 repeat-like 1209 1276 IPR036322 GO:0005515(InterPro)
Tan01g5029 1287 Gene3D - 1192 1276 IPR015943 GO:0005515(InterPro)
Tan01g5029 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 515 589 IPR013083 -
Tan01g5029 1287 Pfam WD domain, G-beta repeat 1208 1234 IPR001680 GO:0005515(InterPro)
Tan01g5029 1287 Pfam WD domain, G-beta repeat 1243 1276 IPR001680 GO:0005515(InterPro)
Tan01g5029 1287 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g5029 1287 MobiDBLite consensus disorder prediction 440 455 - -
Tan01g5029 1287 SUPERFAMILY ARM repeat 141 1151 IPR016024 -
Tan01g5029 1287 SUPERFAMILY RING/U-box 508 588 - -
Tan01g5029 1287 MobiDBLite consensus disorder prediction 299 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5029 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5027 Tan-Chr1:115893643 Tan01g5029 Tan-Chr1:115895073 0.00E+00 dispersed
Tan01g5029 Tan-Chr1:115895073 Tan09g1257 Tan-Chr9:64900860 4.30E-154 dispersed
Tan01g5028 Tan-Chr1:115893858 Tan01g5029 Tan-Chr1:115895073 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39