Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g5033 | ATGGCTACACAAATCTCAGTCATATTATATCTCTTAACAATTCAAGTTTCAATATCAGGAGTATTATCCACGACTTTCAGCATAGTAAATAAATGTGATTACACGGTATGGCCGGGAATCCTCTCAAACGCCGGAATTTCACCACTTCCGACTACTGGTTTCGTCCTCGCCTCCGGTGAGTCCAAAACGCTCTCCGCTCCGGCCTCTTGGGGCGGCCGGTTCTGGGGCCGAACCCACTGCTCCCAAGACTCCACTGGCAAATTCTCTTGCCTCACCGGTGATTGCGGCTCCGACAAAGTCGAGTGCAGCGGAAACGGCGCCAAGCCGCCGGCTACTCTGGCGGAGTTCACCCTCGACGGCGCCGACGGGCTGGATTTCTTCGACGTGAGTTTGGTCGACGGTTACAACATCCCTATGCTGGTGGTCCCACAGGGCGGCACCGGCGAGAAATGCGTGAGTACCGGATGCGTGGTGGATTTGAACGGCGCGTGTCCTTCAGAGCTCAAGGTTACGAGCGTGGACGGCGGACAGAGTGTCGCGTGTAAAAGCGCGTGTGAAGCATTTAACCAGCCGCAGTTCTGTTGTAGTGGCGCGTACGCGACTCCCGATACTTGCAAGCCCTCTCCGTACTCGCAAGCGTTTAAAAACGCGTGCCCACGCGCCTACAGCTACGCTTACGACGATTTAACCAGCACGTTTACATGTCTCGACGCCGATTATATCATCACATTTTGCCCATCGCCCAACACGAGTCAGAAATCAACAGAAAATCACAACACAAACACGCCGGCGATCAACGGCGGCAACAGCACCATGGTTTATGAAGGGGCTGAGTTTGATCAAAGCGGCGCGTCGAGAACAACGCTCCGCCGTATTCTCGGCGTAGTTGTTGCCATGGTGGCCGTCCTTCAAAGTCGGCAACTCTTTTGA | 930 | 54.41 | MATQISVILYLLTIQVSISGVLSTTFSIVNKCDYTVWPGILSNAGISPLPTTGFVLASGESKTLSAPASWGGRFWGRTHCSQDSTGKFSCLTGDCGSDKVECSGNGAKPPATLAEFTLDGADGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPSELKVTSVDGGQSVACKSACEAFNQPQFCCSGAYATPDTCKPSPYSQAFKNACPRAYSYAYDDLTSTFTCLDADYIITFCPSPNTSQKSTENHNTNTPAINGGNSTMVYEGAEFDQSGASRTTLRRILGVVVAMVAVLQSRQLF | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 115914840 | 115917158 | + | Tan0001904.1 | Tan01g5033 | 742457 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g5033 | 309 | FunFam | THAUMATIN-LIKE PROTEIN 1 | 24 | 246 | - | - | |
| Tan01g5033 | 309 | PRINTS | Pathogenesis-related protein signature | 236 | 245 | IPR001938 | - | |
| Tan01g5033 | 309 | PRINTS | Pathogenesis-related protein signature | 25 | 37 | IPR001938 | - | |
| Tan01g5033 | 309 | PRINTS | Pathogenesis-related protein signature | 73 | 84 | IPR001938 | - | |
| Tan01g5033 | 309 | PRINTS | Pathogenesis-related protein signature | 125 | 141 | IPR001938 | - | |
| Tan01g5033 | 309 | SMART | tha2 | 26 | 246 | IPR001938 | - | |
| Tan01g5033 | 309 | PANTHER | OS03G0233200 PROTEIN | 7 | 246 | IPR001938 | GO:0005576(PANTHER)|GO:0006952(PANTHER) | |
| Tan01g5033 | 309 | ProSiteProfiles | Thaumatin family profile. | 23 | 246 | IPR001938 | - | |
| Tan01g5033 | 309 | PIRSF | PR5 | 1 | 283 | IPR001938 | - | |
| Tan01g5033 | 309 | Pfam | Thaumatin family | 30 | 246 | IPR001938 | - | |
| Tan01g5033 | 309 | Gene3D | Thaumatin | 24 | 246 | IPR037176 | - | |
| Tan01g5033 | 309 | SUPERFAMILY | Osmotin, thaumatin-like protein | 24 | 247 | IPR037176 | - | |
| Tan01g5033 | 309 | CDD | TLP-PA | 25 | 245 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g2305 | Tan-Chr1:27719526 | Tan01g5033 | Tan-Chr1:115914840 | 8.00E-88 | dispersed | |
| Tan01g5033 | Tan-Chr1:115914840 | Tan02g2082 | Tan-Chr2:90348461 | 1.50E-113 | dispersed | |
| Tan01g5033 | Tan-Chr1:115914840 | Tan01g5034 | Tan-Chr1:115914840 | 1.40E-146 | tandem | |
| Tan02g1926 | Tan-Chr2:87848650 | Tan01g5033 | Tan-Chr1:115914840 | 7.50E-68 | transposed | |
| Tan01g5033 | Tan-Chr1:115914840 | Tan02g2081 | Tan-Chr2:90348461 | 2.80E-120 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g5033 | - | - | - | 0.0 |