Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5044 ATGGCGACGGTTACCGATTATTCGTCTAATCACCGTTCGCCTAGCGGAACTGGTTTTACCGGCGATAATCTCAACAGCTCCGAGTTCCGGCGGAAGAATCATCAGTCTCCGTGGGCTCAAGTCGTCCGAGGCGAGCCAGAATCGATCTCACCTGTCGATCAGTCTCCGCTGTCGTCGTCGTCATCATCTTTGTCCTCGCTGGCAGTTTCTGCTACAGAAACCCCCGCTCCTGCTTCGCCGCCGTCTGATAACTTCACATCTTCCGAGAACTACGATGGAAATGACGGTAATGCAACGGGTACGACGAGGAAGCAGGCTTGGAACAAGCCTTCGAATGGCGTCGTTGAGGGCGGTCCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGACTCCGCGAGGGCTTCTCCAAAATTAGCAGTTGATTCTCCTCCCAAGCCTACCGTCGAATTATCACTTCCCCCTTCTCAGGGGCCTGTCAATGTACCCCCTCAGCCTCAGCGGCAAGCTACAAATAATTCCAAATCGAACCCCAGTCTGAAACATCCGGTGGTTGCTCGACAAAGATCCTCAAGACGGGGCGGTGGTGGTGGTGGCAACTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCTGCCGCCACCACCACCCTTCCCTGTATTTCAAATTCCTGCAAGTAGTTATTGTAATCTGATACCAGCAATTCCCGATCCTTCTCCTGGAGAACCATTATTCAGGAGCAATAATTGGGATCCACGGGCTGTTGCAGGCTTTGTGCCTCAGACAAATTTTGCTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTAGCTCTCCATCCCCGTGGTGATGGTCACTACCATAACAATCGTGGGGGAAAGCGTGATCAAGATCGTGGAATATATTCTAATTCTCGAGATGCTCATTTTCAGCAGCCCAGGCCCCCTACTAGAGGCTTTATGAGGCCTTCACCACCTTACACTGCTCAGTTTCCCCAGCCTGTTAGACCTCATGGGAATCCTATGCCTCCTCCTGAGTTTGTCTATGTCCCTACATTGCCCTTGGAGCCTTACAGAGGCATGCCTTTCCTGCCACGACCTTCCATTTACTATCCTGCTGTAGATCCCACTCTATCTGCACCACTAGTTAAGCAGATTGAATATTATTTCAGTGACGATAATTTGATAAAGGATAGCTTTTTAAGGTCCATGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCTAGTTTTCCTATGGTACAGAATTTGACAAACAATATTCAATGGATAGTAGAATCCTTGAGAACGTCAACTGTAGTGGAAGTGCAGGATAATAGGATCAGAAAGAGAAATGAGTGGAAGAAATGGACAATAAACTCCAATCGGCTTAGAACTGATTTGGCCTCTTCTACTCCAAGTGGATCAGGTCACGATAGTCTGGCAACTTCTTTTCAAAGGATCAGAGTGGATGAAGGTATGAACCGAAGTATGACAAATGATAGCAATCCTTATAATACCAAGAGTACTTCTGAGATACAATCTTCTGAGTCAGCTGATCGTTCCCAACTTACTAATGGGGAGGTGAATCAGGATGTTCATCAGACTGATATCTGA 1623 48.31 MATVTDYSSNHRSPSGTGFTGDNLNSSEFRRKNHQSPWAQVVRGEPESISPVDQSPLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENYDGNDGNATGTTRKQAWNKPSNGVVEGGPVMGADSWPALADSARASPKLAVDSPPKPTVELSLPPSQGPVNVPPQPQRQATNNSKSNPSLKHPVVARQRSSRRGGGGGGNSMGGPARGFYRPLPPPPPFPVFQIPASSYCNLIPAIPDPSPGEPLFRSNNWDPRAVAGFVPQTNFATDHRNFFPRGNLALHPRGDGHYHNNRGGKRDQDRGIYSNSRDAHFQQPRPPTRGFMRPSPPYTAQFPQPVRPHGNPMPPPEFVYVPTLPLEPYRGMPFLPRPSIYYPAVDPTLSAPLVKQIEYYFSDDNLIKDSFLRSMMDDQGWVPISLIASFPMVQNLTNNIQWIVESLRTSTVVEVQDNRIRKRNEWKKWTINSNRLRTDLASSTPSGSGHDSLATSFQRIRVDEGMNRSMTNDSNPYNTKSTSEIQSSESADRSQLTNGEVNQDVHQTDI 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 115999466 116006249 - Tan0021668.1 Tan01g5044 742468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5044 540 MobiDBLite consensus disorder prediction 51 109 - -
Tan01g5044 540 MobiDBLite consensus disorder prediction 148 162 - -
Tan01g5044 540 Gene3D - 374 463 IPR036388 -
Tan01g5044 540 MobiDBLite consensus disorder prediction 1 34 - -
Tan01g5044 540 FunFam la-related protein 1B isoform X2 369 459 - -
Tan01g5044 540 CDD LAM 383 452 - -
Tan01g5044 540 PANTHER LUPUS LA PROTEIN-RELATED 61 475 IPR045180 GO:0003723(PANTHER)
Tan01g5044 540 ProSiteProfiles La-type HTH domain profile. 373 462 IPR006630 -
Tan01g5044 540 MobiDBLite consensus disorder prediction 1 214 - -
Tan01g5044 540 MobiDBLite consensus disorder prediction 495 540 - -
Tan01g5044 540 MobiDBLite consensus disorder prediction 489 540 - -
Tan01g5044 540 Pfam La domain 383 438 IPR006630 -
Tan01g5044 540 SUPERFAMILY Winged helix DNA-binding domain 372 462 IPR036390 -
Tan01g5044 540 SMART la 377 455 IPR006630 -
Tan01g5044 540 MobiDBLite consensus disorder prediction 163 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5044 K18757 - - csv:101220887 808.135
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5044 Tan-Chr1:115999466 Tan03g2111 Tan-Chr3:75959235 5.10E-56 dispersed
Tan01g5044 Tan-Chr1:115999466 Tan01g5045 Tan-Chr1:115999466 9.30E-244 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44