Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5059 ATGGATTCTCTCCCTCTATTCCTCACCGGAACTCTTCTAGCCGCCGGCCTTTACTGGTTCTTCTTCATCTACGGCGGCGCCGAACGCCAAGGCAAACTCGCCGTCAACCTTTCCGGCGGCTCCATCTCCTCTGAGAAAGTCCAGGACAAGTACAAGCAGTACTGGTCGTTTTTCCGCCGCCCAGAGAAGATCGAAACCACCGAAAAAGTCCCCGATTTTGTAGATACCTTTTACAACTTGGTCACCGACATCTACGAGTGGGGCTGGGGCCAGTCCTTCCACTTCGCCCGTCCGATTCCGGGAAAGTCCTACAAAGAAGCCACACGCATCCATGAAGAAATGGTCGCCGATCTAGTTAAGGCCAAACCGGGAGATCGTATTCTCGACGTCGGATGCGGCGTGGGCGGACCGATGCGGTCCATCGCGGCCCACTCGAGAGCCAAAGTGGTCGGAATCACCATCAACGACTACCAAGTCCAACGCGCCCGACTGCACAACAAGAAAGCCGAACTGGACTCGCTCTGTGAAGTCGTGTGCGGAAATTTCCTCGAAATGCCATTTTCGGAGGAGACCTTCGATGGTGCATATGCAATTGAAGCGACCTGCCACGCGCCGAAGCTTGAAGATGTTTACACAGAAATTTACAGAGTTTTGAAGCCGGGTTCGTTGTTCGTTTCGTTGGAGTGGGTTTCGACGGACAAATACGACACCCAAAATCCAGAGCATGTGAAGATTATTGAAGAGATTGCGAGAGGGAACGCTTTGCCTGGAGTGAAATCGTACATGGATGTGGCGAAGGCGGCTAAGAAAGTGGGATTTGAGGTTCTGAAAGAGGAGGATCTGGCCAAGCCGCCGGCGCTGCCGTGGTGGGACCGGTTGAAAATGGGTCGACTCGCGTACTGGAGGAACCATATCCTCGTCACGGTTCTGGCCGCGTTGAGGATCGCTCCTAAAGGGACCCTGGAAGTTCATGAAATGTTGGTGGAGGCCGCCGATTATTTGACCCGAAGCGGCGACGCCGGAATCTTCTCGCCGATGCATTTGATTGTGTGTAGAAAACCAGAATCGTCTAAATCTTGTTAA 1083 53.28 MDSLPLFLTGTLLAAGLYWFFFIYGGAERQGKLAVNLSGGSISSEKVQDKYKQYWSFFRRPEKIETTEKVPDFVDTFYNLVTDIYEWGWGQSFHFARPIPGKSYKEATRIHEEMVADLVKAKPGDRILDVGCGVGGPMRSIAAHSRAKVVGITINDYQVQRARLHNKKAELDSLCEVVCGNFLEMPFSEETFDGAYAIEATCHAPKLEDVYTEIYRVLKPGSLFVSLEWVSTDKYDTQNPEHVKIIEEIARGNALPGVKSYMDVAKAAKKVGFEVLKEEDLAKPPALPWWDRLKMGRLAYWRNHILVTVLAALRIAPKGTLEVHEMLVEAADYLTRSGDAGIFSPMHLIVCRKPESSKSC 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116132828 116134363 - Tan0015221.1 Tan01g5059 742483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5059 360 PANTHER - 1 358 - -
Tan01g5059 360 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 77 354 IPR030384 GO:0008168(InterPro)
Tan01g5059 360 Gene3D Vaccinia Virus protein VP39 44 308 IPR029063 -
Tan01g5059 360 FunFam Methyltransferase 44 305 - -
Tan01g5059 360 Pfam Methyltransferase domain 128 225 IPR013216 GO:0008757(InterPro)
Tan01g5059 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 76 355 IPR029063 -
Tan01g5059 360 Pfam Sterol methyltransferase C-terminal 292 355 IPR013705 GO:0006694(InterPro)|GO:0008168(InterPro)
Tan01g5059 360 CDD AdoMet_MTases 126 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5059 K08242 - - csv:101220177 689.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5059 Tan-Chr1:116132828 Tan04g2398 Tan-Chr4:82775922 2.90E-68 dispersed
Tan01g5059 Tan-Chr1:116132828 Tan09g1819 Tan-Chr9:69646566 1.10E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g276 Blo03g00637 Blo03g01532 . Bda09g00488 . Bpe08g01040 . . . . . Cma09g00888 Car01g01015 Car09g00805 Sed01g0385 Cpe06g00711 Cpe02g00718 Bhi09g02012 Tan01g5059 Cmetu11g1228 . Hepe01g1362 Mch11g1104 . Cla11g01791 Cam11g1855 Cec11g1880 Cco11g1886 Clacu11g2017 Cmu11g1827 Cre11g2233 Cone6ag0121 Cone9ag0145 . . Lsi04g01294 . . . . . . . Bpe11g00496 . Bma07g01194 . . Cmo01g01244 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007184 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 1 1 1 1 34