Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5063 ATGTCACCGCCGGCGAGGACTAAGACCTGGAACGGCGGCGGGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATACCTGTGATTGGAGGGAAGGAGCTTGACTTGCATGTTTTATATTTAGAGGTTACAAGAAGGGGCGGCCATGAAAAGGTTGTGGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTCTTTAAGTTTTCTCCTACGACGACGAGTGCTTCGTTTGTATTGAGAAAACATTATCTAAGTCTTCTGTATCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATTTGTGCCCCTCAAGCGCCATTCTCTTTTGGTAGCCCTACGAGTGAAAACGAATTGGCTCTGGTGGAATATACTCCCAAAACAACGTCGTTTTCGCCTGGTCCTCCTGCTGAAGTAACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTTGTGACTGTGAAATTGGGATCTGAGGTTCTGAGAGGAGTACTTTACCATCCAGAACAGCCAGCCCCATCGGATCTACGACCCGAGTCAACTAATGCCATTGTACCTTACACCGGTGGCAGACATCGACATTCTGGTCGACGACACCGGAGAAGTCGGAGAAGGGGAGACCCGAATCACCCTAAGCCAAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGTCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAACTAAGGCAGGCAACTGATATTCATGCAGCTAACTATCCAAAACATGTATAG 972 46.4 MSPPARTKTWNGGGDKHYPPALATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYLEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPAPSDLRPESTNAIVPYTGGRHRHSGRRHRRSRRRGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKLRQATDIHAANYPKHV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116176721 116178632 - Tan0003820.1 Tan01g5063 742487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5063 323 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Tan01g5063 323 MobiDBLite consensus disorder prediction 196 244 - -
Tan01g5063 323 SUPERFAMILY ARID-like 27 127 IPR036431 GO:0003677(InterPro)
Tan01g5063 323 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Tan01g5063 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Tan01g5063 323 Coils Coil 291 314 - -
Tan01g5063 323 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Tan01g5063 323 MobiDBLite consensus disorder prediction 218 235 - -
Tan01g5063 323 CDD HMG-box_AtHMGB9-like 238 304 - -
Tan01g5063 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 317 - -
Tan01g5063 323 SMART ARID_2 26 116 - -
Tan01g5063 323 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Tan01g5063 323 SMART hmgende2 237 306 IPR009071 -
Tan01g5063 323 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677(InterPro)
Tan01g5063 323 SUPERFAMILY HMG-box 235 309 IPR036910 -
Tan01g5063 323 Gene3D - 25 126 IPR036431 GO:0003677(InterPro)
Tan01g5063 323 Gene3D High mobility group box domain 222 317 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5063 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5063 Tan-Chr1:116176721 Tan06g2304 Tan-Chr6:74192862 6.50E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2305 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2306 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2304 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2310 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2311 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2312 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan01g5166 . 121 417 ARID Transcription Factor Family AT1G20910 64.0 1.8e-103 373.6
Tan11g1966 . 209 480 ARID Transcription Factor Family AT1G20910 60.1 9.6e-89 324.7
Tan08g2268 . 194 491 ARID Transcription Factor Family AT1G20910 57.2 2.8e-88 323.2
Tan01g5167 . 121 386 ARID Transcription Factor Family AT1G20910 62.0 4.5e-86 315.8
Tan01g5063 . 16 309 ARID Transcription Factor Family AT1G76110 68.2 1.0e-110 397.5
Tan01g5166 . 138 447 ARID Transcription Factor Family AT1G76510 72.8 2.6e-127 453.0
Tan11g1966 . 188 510 ARID Transcription Factor Family AT1G76510 60.3 6.0e-108 388.7
Tan08g2268 . 180 512 ARID Transcription Factor Family AT1G76510 58.9 1.1e-106 384.4
Tan01g5167 . 138 386 ARID Transcription Factor Family AT1G76510 69.7 6.4e-94 342.0
Tan06g0070 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan06g0071 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan04g2843 . 2 741 ARID Transcription Factor Family AT3G43240 58.9 1.7e-248 856.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26616 PF01388 ARID 6.10E-18 CL0123 Tan TR