Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5063 ATGTCACCGCCGGCGAGGACTAAGACCTGGAACGGCGGCGGGGATAAGCATTACCCACCGGCGCTGGCCACCCATGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATACCTGTGATTGGAGGGAAGGAGCTTGACTTGCATGTTTTATATTTAGAGGTTACAAGAAGGGGCGGCCATGAAAAGGTTGTGGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTCTTTAAGTTTTCTCCTACGACGACGAGTGCTTCGTTTGTATTGAGAAAACATTATCTAAGTCTTCTGTATCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATTTGTGCCCCTCAAGCGCCATTCTCTTTTGGTAGCCCTACGAGTGAAAACGAATTGGCTCTGGTGGAATATACTCCCAAAACAACGTCGTTTTCGCCTGGTCCTCCTGCTGAAGTAACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTTGTGACTGTGAAATTGGGATCTGAGGTTCTGAGAGGAGTACTTTACCATCCAGAACAGCCAGCCCCATCGGATCTACGACCCGAGTCAACTAATGCCATTGTACCTTACACCGGTGGCAGACATCGACATTCTGGTCGACGACACCGGAGAAGTCGGAGAAGGGGAGACCCGAATCACCCTAAGCCAAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGTCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAACTAAGGCAGGCAACTGATATTCATGCAGCTAACTATCCAAAACATGTATAG 972 46.4 MSPPARTKTWNGGGDKHYPPALATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYLEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPAPSDLRPESTNAIVPYTGGRHRHSGRRHRRSRRRGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKLRQATDIHAANYPKHV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116176721 116178632 - Tan0003820.1 Tan01g5063 742487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5063 323 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Tan01g5063 323 MobiDBLite consensus disorder prediction 196 244 - -
Tan01g5063 323 SUPERFAMILY ARID-like 27 127 IPR036431 GO:0003677(InterPro)
Tan01g5063 323 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Tan01g5063 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Tan01g5063 323 Coils Coil 291 314 - -
Tan01g5063 323 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Tan01g5063 323 MobiDBLite consensus disorder prediction 218 235 - -
Tan01g5063 323 CDD HMG-box_AtHMGB9-like 238 304 - -
Tan01g5063 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 317 - -
Tan01g5063 323 SMART ARID_2 26 116 - -
Tan01g5063 323 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Tan01g5063 323 SMART hmgende2 237 306 IPR009071 -
Tan01g5063 323 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677(InterPro)
Tan01g5063 323 SUPERFAMILY HMG-box 235 309 IPR036910 -
Tan01g5063 323 Gene3D - 25 126 IPR036431 GO:0003677(InterPro)
Tan01g5063 323 Gene3D High mobility group box domain 222 317 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5063 Tan-Chr1:116176721 Tan06g2304 Tan-Chr6:74192862 6.50E-75 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26616 PF01388 ARID 6.10E-18 CL0123 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5063 - - - 0.0