Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5081 ATGGCAGACCATTCAAATGAAGGTTCCAGCACTAGCAGTATTTCCGGGGAGACTGCAACTTCGAATATTGAGCTGAACATCAAGACTTTAGATTCACATATCTACAGTTTTCAAGTGAATAAAGATATGCCGGTTCAATTATTCAAGGAGAAAATCGCAAGTGAAATAGGAATCCCAGTGAATCAGCAACGTTTGATATTCAGGGGAAAGGTCTTAAAGGATGAACATGCTCTTTCTGAGTATCATTTGGAAAATGGACATACCTTGCATTTAGTTGAAAGACAACCAACTCAGCAACATGGAGTATCTGATACTGGCGCAGGCGACAGACTTGCAAATGTACCTTCATCAACCAGTAACGAAGCTGGAGCTGGTGCCCCTCGAAATCGTGTAGGACAAATTGCACATAGTGTGGTTTTAGGAACATTTAATGTTGGGGATCAAGGTGAAGGCATTGTTCCTGATCTTTCCCGGGTTATTGGGGCAGTTCTGAATTCTATTGGACTAAGCAGCCAAAATACAAACATCCCAATGGGTATGCAGTCTTCATTGCCTAACAATCGTGGCACAGCAAGTCAAGGAAATGAAACATTTAGAGGTAATATCGGGGCTGGAGGACAAGCAACGAGTCAGGCACAAACTGGACAGGCATTTCCGAGCCAGCCATCACAAAGTTTTCCTCACGTGATTCAAATACCACTTGCCAGTGCCTCCGTACCAGTTCCTTCCATTCATGCGCCCATTCCTGATTCTTTGACAACACTTTCTGAGTTCATGAACCGTATGGAGTATGCAATATCTCAGAATGTTGGAGATCTGCCGAGGGTGGAACTGCCTACCAATCCCCAAGGTTTGCCAACCACTGAATCTTTGAGCACTGTCTTGCACCATGCTCAACGGCTTCTACGTGACTATGCCACAGCTTCACTATCTAATATTGCTCGGCGTTTGGAGCAAGATAGCTCTTCCACTGATCCCTCTGTGAGGGGTCAAATTCAGGAAGAGTCGGTACAAGTAGGACTTAGGATGCAACAATTTGGAGCTCTTCTTTTAGAACTTGGCCGTACAATGTTGACACTCCGAATGGGACAGTCATCTGCTGAGTCGATTGTTAATGCTGGCCCAGCCGTGTATATCTCTCCTACGGGGCCAAATCCCTTGATGGTTCAGCCTTTTCCACTTCAAACTAATCCCCTCCTGGGTGGTGCTGTACTACCATCAAACCCAGTGGCTGTTGGTGCAGTTGGTATTGGCACTGCCCCTAGGCACATCAACATTCACATACATGCTGTTGGTACAAGGTCAAACAATGGAGAGGGAGCACCCGCCGATCATCAGAGTGTCAGTGGCTCAACTGATTCAGGTGTAGCACATGCACCTCCTGTGAGAAGTGTTATTGAGACTGCTGTTCCACATCCATTGGGTGTTTCGATTTCTGCTGCTGTACAACCTGGTGAAGGTGTTTCTTTTTCCCAGCCTATTCCTGACTCTGTTTCTTTATCTTCCATTGTTGCTGATATCAACTCACGAATTAGAGATTTAGTTGGTAATGTTGGAGGTGGTAGCAGTACTGAATCAGGTCAAGGGCAAACGGGAGTTCAGAATTCTTCTATTGGTTCTGGAGCAGGGAGTGAACAGCAAAGTGATACGAAAAGGGACGTGGGTGGAGGGTCAAGTGAGTCATTACCTCGTCGCAACCCTGAAATTGGAAGTGACAAGATTGTAAACACAGACAATATTTGTCGAGATACAGGAAGGGCTGTAAACTCTACTGATTTACCAACATGCTCTGGTGGTAGGGGCTCTGAATTTGTTGGAAGAAATGAAAACAATTCTCAGAGTCAGGCATCTTATGAGACGAGCTTGGGAGCTGGGTCTTCTCAAACTGTTCCACTTGGACTTGGACTGGGAGGTTTGGAACGACCGAGGCGAGGAAGGCAGCAAACTTCACAGGCCAAGGGGGGTAACAGTGGAACCAGCCACAACCAAGGTCCTACAGGCCAGCAGCTTTTACAATCTCTTGCCTCTAGTGCTTCTATGAATAGGTCAAGTGCTCATGAGGCCTCCCCAGGCCTACAATCGACTACTAGCCCTCATCCACAACCAGTTTCTGACAGCCAAATTGATATAGGAAGCAGTATGTCTCAAGTTTTGCAGAGTCCTGCTTTGAATGGACTATTGACAGGGCTTTCAGAGCAAACTGGCGTTGGTTCTCCTGATGTCTTGAGAAACATGTTGCAACAGCTCACGCAGAGCCCTCAAGTGAGAAACACAGTCAATCAAATTGCTCAACAGGTTGACCCTCGAGATCTCGAGCACATGTTTTCTGGGTCAGGAAGAGGCCAAGGCGGTGGTATCGATTTGTCAAGTATGTTCCAACAGATGATGCCTATCGTCTCTCAAGTGCTTGGAGGAGGGCCAAGGCAACCGTCTTCCTCAAACGTTGAAAGAGAGCCAAAGCAACCACCTTCGTCAAACGTCGATAGAGAGCCAAGGCCCCATAGTGAGAGGTCTGGTAGTGGAGTGGAAACATCTAATGATCAAAATGTTCAGATCGACTCTCAAGATCTTGCTCGAAGGATCACATCTACCAATTCTCCAAGGGATGTCTTTCGAGCTGTAGTTGAGAGTTCAGCTCGGCTTTCTGGCAGTAGTAGTGAAGATATTGCAAATGAGTTGTGCAACGATGAAGGACTTGCTAAGGAATATGTAGAGATGTTATCCAATGATGTAAACCGATGGCTACAAGGCAATTCAGATCAAGATAAATAA 2772 46.14 MADHSNEGSSTSSISGETATSNIELNIKTLDSHIYSFQVNKDMPVQLFKEKIASEIGIPVNQQRLIFRGKVLKDEHALSEYHLENGHTLHLVERQPTQQHGVSDTGAGDRLANVPSSTSNEAGAGAPRNRVGQIAHSVVLGTFNVGDQGEGIVPDLSRVIGAVLNSIGLSSQNTNIPMGMQSSLPNNRGTASQGNETFRGNIGAGGQATSQAQTGQAFPSQPSQSFPHVIQIPLASASVPVPSIHAPIPDSLTTLSEFMNRMEYAISQNVGDLPRVELPTNPQGLPTTESLSTVLHHAQRLLRDYATASLSNIARRLEQDSSSTDPSVRGQIQEESVQVGLRMQQFGALLLELGRTMLTLRMGQSSAESIVNAGPAVYISPTGPNPLMVQPFPLQTNPLLGGAVLPSNPVAVGAVGIGTAPRHINIHIHAVGTRSNNGEGAPADHQSVSGSTDSGVAHAPPVRSVIETAVPHPLGVSISAAVQPGEGVSFSQPIPDSVSLSSIVADINSRIRDLVGNVGGGSSTESGQGQTGVQNSSIGSGAGSEQQSDTKRDVGGGSSESLPRRNPEIGSDKIVNTDNICRDTGRAVNSTDLPTCSGGRGSEFVGRNENNSQSQASYETSLGAGSSQTVPLGLGLGGLERPRRGRQQTSQAKGGNSGTSHNQGPTGQQLLQSLASSASMNRSSAHEASPGLQSTTSPHPQPVSDSQIDIGSSMSQVLQSPALNGLLTGLSEQTGVGSPDVLRNMLQQLTQSPQVRNTVNQIAQQVDPRDLEHMFSGSGRGQGGGIDLSSMFQQMMPIVSQVLGGGPRQPSSSNVEREPKQPPSSNVDREPRPHSERSGSGVETSNDQNVQIDSQDLARRITSTNSPRDVFRAVVESSARLSGSSSEDIANELCNDEGLAKEYVEMLSNDVNRWLQGNSDQDK 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116292330 116305249 - Tan0020866.1 Tan01g5081 742505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5081 923 MobiDBLite consensus disorder prediction 644 708 - -
Tan01g5081 923 Pfam Ubiquitin family 25 95 IPR000626 GO:0005515(InterPro)
Tan01g5081 923 MobiDBLite consensus disorder prediction 439 454 - -
Tan01g5081 923 FunFam Large proline-rich protein BAG6 15 107 - -
Tan01g5081 923 MobiDBLite consensus disorder prediction 516 708 - -
Tan01g5081 923 SMART ubq_7 23 94 IPR000626 GO:0005515(InterPro)
Tan01g5081 923 MobiDBLite consensus disorder prediction 519 555 - -
Tan01g5081 923 ProSitePatterns Ubiquitin domain signature. 49 74 IPR019954 -
Tan01g5081 923 MobiDBLite consensus disorder prediction 838 855 - -
Tan01g5081 923 MobiDBLite consensus disorder prediction 604 628 - -
Tan01g5081 923 SUPERFAMILY Ubiquitin-like 21 96 IPR029071 -
Tan01g5081 923 Gene3D - 12 106 - -
Tan01g5081 923 MobiDBLite consensus disorder prediction 582 597 - -
Tan01g5081 923 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 2 916 - GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0051787(PANTHER)|GO:0071818(PANTHER)
Tan01g5081 923 MobiDBLite consensus disorder prediction 805 821 - -
Tan01g5081 923 MobiDBLite consensus disorder prediction 96 124 - -
Tan01g5081 923 MobiDBLite consensus disorder prediction 433 458 - -
Tan01g5081 923 MobiDBLite consensus disorder prediction 96 129 - -
Tan01g5081 923 PRINTS Ubiquitin signature 75 96 IPR019956 -
Tan01g5081 923 PRINTS Ubiquitin signature 54 74 IPR019956 -
Tan01g5081 923 MobiDBLite consensus disorder prediction 203 224 - -
Tan01g5081 923 MobiDBLite consensus disorder prediction 822 837 - -
Tan01g5081 923 ProSiteProfiles Ubiquitin domain profile. 23 98 IPR000626 GO:0005515(InterPro)
Tan01g5081 923 MobiDBLite consensus disorder prediction 801 855 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5081 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2369 Tan-Chr1:28828719 Tan01g5081 Tan-Chr1:116292330 6.20E-09 dispersed
Tan01g5081 Tan-Chr1:116292330 Tan08g0351 Tan-Chr8:3123604 5.80E-60 dispersed
Tan01g5077 Tan-Chr1:116274694 Tan01g5081 Tan-Chr1:116292330 1.60E-22 proximal
Tan01g5081 Tan-Chr1:116292330 Tan01g5082 Tan-Chr1:116292330 0.00E+00 tandem
Tan01g5081 Tan-Chr1:116292330 Tan02g0585 Tan-Chr2:5152147 2.30E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g547 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g2452 . . . . . . . . Bhi09g02931 Tan01g5081 Cmetu07g1738 . . Mch11g0072 . . . . . . . . . . . Cme07g00072
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007185 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 36