Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g5083 ATGGCAGTACACGGCGGCGAAGTAGATCCAAGAAGCGGCTTCTGCAAGTCCACCAAAATCTTCCACAGCAAACGCCGCCCAATCCCTCTTCCCCCCAACCAATCCCTTGATGCGACGACGTTTATCTCTTCCCGCCCTCACAACGGCAAAATTGCCCTCATCGACGCCACCACCGGCCAGCACATCACCTATTCCCACCTCTGGGAATCCGTCGATTCCGTCGCCGCTTCTCTCTCCGACATGGGCATACGAAAAGGCCACGTCATCCTCCTCCTCTCCCCTAACTCCATTTTCTTCCCCATTATTTGTCTCGCCGTCATGTCCATCGGCGCCATCATCACCACCACAAATCCCCTCAATACCCCCCAAGAAATCGCCAAGCAGATCGCCGATTCAAAACCCATTTTAGCCTTCACGACCCAACAACTAATCCCCAAAATCGCCAGCTCCAAATTGCCGATCGTCCTAATCGACGGCCAAATTCAAAACTCCCCAGTGAAAATCGTGTCGACATTGAACGAAATGATGAGGAAAAAACCCAGTGGGAGTAGAATTAAGGAGCGGGTTGAGCAAAACGACACAGCGACTCTGCTTTATTCGTCTGGAACGACAGGGGCGAGCAAGGGCGTAGTTTCGTCCCATAAAAATTTAATTGCGATGGTTCAAGTCGTTGTGACGAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATCTGTACGGTTCCGATGTTTCATATTTATGGGCTTGTGGCTTTCGCTACGGGTCTGCTCTCGTCGGGATCGACGATTGTCGTGTTGTCGAAGTTCGAAATTCATGAGATGTTGTCGGCGATTGAGAAGTACAGGGCCACGTATCTGCCTCTTGTGCCGCCGATTCTGGTGGCGCTGGTGAACGCCGCGGAGCAGATAAAGGGGAAATACGATTTGGGGTCGTTGCACACGGCGTTGTCCGGCGGCGCGCCACTGGGAAAGGAGGTGATTGAGGGTTTTGTTGAGAAGTATCCAAATGTTTCGATTCTTCAGGGATATGGGTTGACGGAGTCCACCGGAATTGGGGCGTCCACCGATTCTCTGGAGGAGAGCCGCCGGTACGGCACGGCGGGGCTTCTTTCGCCGAGCACCGAGGGGATGATTGTTGACCCGGAAACCGGCGAGGCTTTGCCCGTGAACCGGACCGGGGAGCTTTGGCTCCGAGGGCCCACCATAATGAAAGGGTATTTCGGTAATGTGGAGGCCACAGCCTCAACACTTGACTCGGAGGGGTGGCTGAGAACTGGTGATCTGTGTTATATCGATGAAGATGGTTTTATTTTTGTGGTGGATAGGCTTAAAGAACTCATCAAATATAAGGGTTATCAGGTGCCTCCTGCAGAATTAGAGGCGCTGTTACTCACACATCCTAATATCTCTGATGCAGCTGTGATTCCATTTCCAGACAAGGATGTTGGGCAGTATCCAATGGCTTACGTGGTAAGGAAGGGTGGAAGTGACATTTCGCACGAAGATGTAATGCAATTCGTGGCAAAACAGGTGGCACCGTACAAGAGAATTCGGCGGGTGGCGTTCGTGGATTCCATTCCCAAGAATCCGTCCGGTAAGATTCTGAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTCTGA 1644 51.82 MAVHGGEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWESVDSVAASLSDMGIRKGHVILLLSPNSIFFPIICLAVMSIGAIITTTNPLNTPQEIAKQIADSKPILAFTTQQLIPKIASSKLPIVLIDGQIQNSPVKIVSTLNEMMRKKPSGSRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYRATYLPLVPPILVALVNAAEQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVSILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTIMKGYFGNVEATASTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIPFPDKDVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATSKL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 116309724 116318318 - Tan0005369.1 Tan01g5083 742507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g5083 547 CDD 4CL 30 539 - -
Tan01g5083 547 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Tan01g5083 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 539 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
Tan01g5083 547 SUPERFAMILY Acetyl-CoA synthetase-like 44 544 - -
Tan01g5083 547 Pfam AMP-binding enzyme 47 407 IPR000873 -
Tan01g5083 547 Gene3D - 445 546 IPR045851 -
Tan01g5083 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 444 - -
Tan01g5083 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Tan01g5083 547 FunFam 4-coumarate--CoA ligase 2 445 546 - -
Tan01g5083 547 Gene3D - 18 444 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5083 Tan-Chr1:116309724 Tan05g2932 Tan-Chr5:81528263 3.40E-132 dispersed
Tan01g5083 Tan-Chr1:116309724 Tan01g5084 Tan-Chr1:116309724 1.40E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g5083 K10526 - csv:101221396 1001.89